View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4179_low_4 (Length: 264)
Name: NF4179_low_4
Description: NF4179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4179_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34131328 - 34131578
Alignment:
| Q |
1 |
tccacctcttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacataacccattaaattgagcatcaatctacctttgaatatt |
100 |
Q |
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| T |
34131328 |
tccacctcttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacacaacccattaaattgagcatcaatctacctttgaatatt |
34131427 |
T |
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| Q |
101 |
ctaaatgaccaaaa----------agttcgtttttcaaatgaaattattcactatttatattaattatcaatcttacaatttgggttctgaataactcaa |
190 |
Q |
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| T |
34131428 |
ctaaatgaccaaaagaaaatgaaaagttcgtttttcaaatgaaattattcactatttatattaattatcaatcttacaatttgggttttgaataactcaa |
34131527 |
T |
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| Q |
191 |
ccataaaatcggttgtaaggtgagaaatgttcacctatacacttgagtcac |
241 |
Q |
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| T |
34131528 |
ccataaaatcggttgtaaggtgagaaatgttcacctatacacttgagtcac |
34131578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 34126197 - 34126263
Alignment:
| Q |
12 |
aatatactcttcaagtatagccctgctcatgtagacatcaattttaaacataacccattaaattgag |
78 |
Q |
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| T |
34126197 |
aatatactcttcaattatattcctgctcatgttgacattaattttaaacataaccaattaaattgag |
34126263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 34140189 - 34140247
Alignment:
| Q |
13 |
atatactcttcaagtatagccctgctcatgtagacatcaattttaaacataacccatta |
71 |
Q |
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||||||||||||| |||| | || ||||||| ||||||||||||||| | ||||||||| |
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| T |
34140189 |
atatactcttcaattataactctactcatgttgacatcaattttaaaaacaacccatta |
34140247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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