View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4179_low_5 (Length: 255)
Name: NF4179_low_5
Description: NF4179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4179_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 32684751 - 32684999
Alignment:
| Q |
6 |
aacctcgaatcataagaatctgagactactaaagtgttggcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatt |
105 |
Q |
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| T |
32684751 |
aacctcgaatcataagaatctgagactactaaagtgttggcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatt |
32684850 |
T |
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| Q |
106 |
tgaataaaaattttgccacgccattctagaaattaagaaaccagcagttggattggagttgttgaatttgagttctttaatattaattaacctgtaaacc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32684851 |
tgaataaaaattttgccacgccattctagaaattaagaaaccagcagttggattggagttgttgaatttgagttctttaatattaattaacctataaacc |
32684950 |
T |
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| Q |
206 |
agcagctggattggagttgttgaatgcagcgcggactgccctggataaa |
254 |
Q |
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| T |
32684951 |
agcagttggattggagttgttgaatgcagcgcggactgccctggataaa |
32684999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 32559669 - 32559538
Alignment:
| Q |
6 |
aacctcgaatcataagaatctgagactactaaagtgttggcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatt |
105 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559669 |
aacctcgaatcataagaatccgagactactaaagtgttagcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatt |
32559570 |
T |
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| Q |
106 |
tgaataaaaattttgccacgccattctagaaa |
137 |
Q |
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| T |
32559569 |
tgaataaaatttttgccacgccattctagaaa |
32559538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 32683211 - 32683286
Alignment:
| Q |
171 |
atttgagttctttaatattaattaacctgtaaaccagcagctggattggagttgttgaatgcagcgcggactgccctggat |
251 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
32683211 |
atttgagttctttaatattaattaacctataaaccagcag-----ttggagttgttgaatgcagcgcgtactgccctggat |
32683286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 33011092 - 33011053
Alignment:
| Q |
171 |
atttgagttctttaatattaattaacctgtaaaccagcag |
210 |
Q |
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| T |
33011092 |
atttgagttctttaatattaattaacctataaaccagcag |
33011053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 28711086 - 28711125
Alignment:
| Q |
171 |
atttgagttctttaatattaattaacctgtaaaccagcag |
210 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |
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| T |
28711086 |
atttgagttctttaatattaattaacctctaaacctgcag |
28711125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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