View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4179_low_6 (Length: 250)
Name: NF4179_low_6
Description: NF4179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4179_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34131256 - 34131017
Alignment:
| Q |
1 |
tcttcaagtatcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131256 |
tcttcaagtatcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgc |
34131157 |
T |
|
| Q |
101 |
cttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131156 |
cttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacatt |
34131057 |
T |
|
| Q |
201 |
atcaatgttggtgatatcattcaggtactttgggcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34131056 |
atcaatgttggtgatatcattcaggtactttgggcctatg |
34131017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34136947 - 34136717
Alignment:
| Q |
1 |
tcttcaagtatcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgc |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
34136947 |
tcttcaaagatcacactagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgc |
34136848 |
T |
|
| Q |
101 |
cttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||| ||| || ||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34136847 |
cttaactattcttgcccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacatt |
34136748 |
T |
|
| Q |
201 |
atcaatgttggtgatatcattcaggtacttt |
231 |
Q |
| |
|
||||| ||| ||||||| || |||||||||| |
|
|
| T |
34136747 |
atcaacgtttgtgatattatccaggtacttt |
34136717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 34142742 - 34142524
Alignment:
| Q |
10 |
atcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgccttaactat |
109 |
Q |
| |
|
|||||||||||||| ||||| | ||||| |||||||||||||||||||||||||| || ||||| | ||| | ||| |||||| |||||||||||||||| |
|
|
| T |
34142742 |
atcaaactagctttcttagacttaaccattatcctccatgcccttaccctcaccttgctcttggtgctggtccacataaggattctggtgccttaactat |
34142643 |
T |
|
| Q |
110 |
tcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacattatcaatgtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||| || ||||||||||| ||||| |||||| |
|
|
| T |
34142642 |
tcttgcccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgggttcttgtgaaacccacaccagatgcttatattattaatgtt |
34142543 |
T |
|
| Q |
210 |
ggtgatatcattcaggtac |
228 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
34142542 |
ggtgatgtcattcaggtac |
34142524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34140105 - 34139875
Alignment:
| Q |
1 |
tcttcaagtatcaaactagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
34140105 |
tcttcaagtatcaaactagctttataagattcaactactatcctccatgcccttaccctcacctagctcttggccttggaagacacaaggatgctggtgc |
34140006 |
T |
|
| Q |
101 |
cttaactattcttgcccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacatt |
200 |
Q |
| |
|
||| ||||||||| ||| | ||||||||| ||| |||||||||||||||||| |||| |||||| |||||||||| |||||||||| |||| | || ||| |
|
|
| T |
34140005 |
cttgactattcttaccctaaatgaggttgaaggtcttgaagtgaagcgtaaaacagatcaacaacgggttcttgtaaaacctacccgagatccgtatatt |
34139906 |
T |
|
| Q |
201 |
atcaatgttggtgatatcattcaggtacttt |
231 |
Q |
| |
|
||||| |||| | ||| ||||||||||||| |
|
|
| T |
34139905 |
atcaacattggcggtattattcaggtacttt |
34139875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 34126090 - 34125884
Alignment:
| Q |
25 |
ttagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgccttaactattcttgcccaagatga |
124 |
Q |
| |
|
||||| |||| |||||||||||||| |||| ||| | ||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34126090 |
ttagaatcaatcactatcctccatgtccttctcctgagctagctcttggcatgggaagacacaaggatgctggtgccttaactattcttgcccaagatga |
34125991 |
T |
|
| Q |
125 |
ggttggaggacttgaagtgaagcgt-aaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacattatcaatgttggtgatatcattca |
223 |
Q |
| |
|
||||| || ||||||||||||| | |||| | ||| ||||||||||||||||||| |||||| |||||| ||| ||||| ||||||||| ||| ||| |
|
|
| T |
34125990 |
ggttgctggtcttgaagtgaagcatcaaatttca-caagaatgggttcttgtgaaacccaccccaaatgctttcatcatcaacgttggtgatctcactca |
34125892 |
T |
|
| Q |
224 |
ggtacttt |
231 |
Q |
| |
|
|||||||| |
|
|
| T |
34125891 |
ggtacttt |
34125884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 12387355 - 12387262
Alignment:
| Q |
31 |
tcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgccttaactattcttgcccaagatga |
124 |
Q |
| |
|
|||| ||||||||||||||||||| |||| | | |||||||| ||||| || ||||||||| || |||| || ||| | ||||| |||||||| |
|
|
| T |
12387355 |
tcaatcactatcctccatgcccttcccctgatttggcacttggtgttggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatga |
12387262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University