View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4180_low_4 (Length: 265)
Name: NF4180_low_4
Description: NF4180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4180_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 7692720 - 7692497
Alignment:
| Q |
15 |
agaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
7692720 |
agaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatcgggaggaattgtggtggactactagttccagcaggagatgtgatgtgtgt |
7692621 |
T |
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| Q |
115 |
atgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt-- |
212 |
Q |
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| T |
7692620 |
atgctgatgtgcaatgactatggtcataaagtagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttga |
7692521 |
T |
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| Q |
213 |
gagttccaagacaattgagagaga |
236 |
Q |
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| T |
7692520 |
gagttccaagacaattgagagaga |
7692497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 10016816 - 10017060
Alignment:
| Q |
15 |
agaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgt |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
10016816 |
agaagaaagagttgagatttgtggagcttattgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatgtgatatgtgt |
10016915 |
T |
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| Q |
115 |
atgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt-- |
212 |
Q |
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| T |
10016916 |
attctgatgtgcaatgactatggtcataaaatagtgatttgaaaatataaaatattaaaaatagatataaattaatgccttgaaattgaatagtttttga |
10017015 |
T |
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| Q |
213 |
gagttccaagacaatt--gagagagacaacaccgtcttccctatgc |
256 |
Q |
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| T |
10017016 |
gagttccaagacaattgagagagagacaaca-cgtcttccctatgc |
10017060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 8193 - 8438
Alignment:
| Q |
15 |
agaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatg-tgaggtgtg |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
8193 |
agaagaaagagttgagatttgtggagcttattgaggaaaagctctcgatctgaaggaattgtggtggactactagttccagcaggagatggtgatatgtg |
8292 |
T |
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| Q |
114 |
tatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt- |
212 |
Q |
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||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
8293 |
tattctgatgtgcaatgactatggtcataaaatagtgatttgaaaatataaaatattaaaaatagatataaattaattccttgaaattgaatagtttttg |
8392 |
T |
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| Q |
213 |
-gagttccaagacaatt--gagagagacaacaccgtcttccctatgc |
256 |
Q |
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| T |
8393 |
agagttccaagacaattgagagagagacaaca-cgtcttccctatgc |
8438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 26 - 256
Target Start/End: Complemental strand, 26414926 - 26414693
Alignment:
| Q |
26 |
ttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggtggactactagttccagcagaagatgtgaggtgtgtatgctgatgtg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||| |||||||||||| |||| ||| ||||||||||||||||| |
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| T |
26414926 |
ttgagatttgtggagctgattgaggaaaagctctcgttccgaaggaattgtggtgtactagtagttccagcaggagatatgatgtgtgtatgctgatgtg |
26414827 |
T |
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| Q |
126 |
caatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagttttt--gagttccaaga |
223 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26414826 |
caatgactatggtcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattgaatagtttttgagagttccaaga |
26414727 |
T |
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| Q |
224 |
caatt--gagagagacaacaccgtcttccctatgc |
256 |
Q |
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| T |
26414726 |
caattgagagagagacaaca-cgtcttccctatgc |
26414693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 103 - 256
Target Start/End: Original strand, 13855175 - 13855331
Alignment:
| Q |
103 |
tgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttgaaattg |
202 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13855175 |
tgtgatgtgtgtatgctgatgtgcaatgactatggtcataaagtagtgatttgaaaatataaaatattaaaaatagacataaattaatgccttggaattg |
13855274 |
T |
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| Q |
203 |
aatagttttt--gagttccaagacaatt--gagagagacaacaccgtcttccctatgc |
256 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
13855275 |
aatagtttttgagagttccaagacaattgagagagagacaaca-cgtcttccctatgc |
13855331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 10474248 - 10474187
Alignment:
| Q |
102 |
atgtgaggtgtgtatgctgatgtgcaatgactatgatcataaagtagtgatttgaaaatata |
163 |
Q |
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|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
10474248 |
atgtgatgtgtgtatgctgatgtgcaatgactatggttataaagtagtgatttgaaaatata |
10474187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 10474316 - 10474253
Alignment:
| Q |
15 |
agaagaaagagttgagatttgtggagctgattgaggaaaagctctcgatctgaaagaattgtggt |
79 |
Q |
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||||||||||||| |||||||||||||||||||||||| || || |||||||| |||||||||| |
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| T |
10474316 |
agaagaaagagtt-agatttgtggagctgattgaggaacagttcctgatctgaaggaattgtggt |
10474253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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