View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4181_high_1 (Length: 432)
Name: NF4181_high_1
Description: NF4181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4181_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 35770074 - 35769673
Alignment:
| Q |
17 |
acctcccattatagtatccttacaatgattcaaatcaagctaacccataacttttttaacacttgagattttcccttttgagagactattcggaaaccga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
35770074 |
acctcccattatagtatccttacaatgattcaaatcaagctaacccataacttttttaacacttgagattttccctttagagagactattcggaaatcga |
35769975 |
T |
|
| Q |
117 |
agaagagacgaaaagattagtgtctcacagactgataggtgaggatagaagatgtcatgttgcgcaacaaatcctaagttttgtttcactgattttgaga |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35769974 |
agaagagacgaaaagactagtgtctcacagactgataggtgaggatagaagatgtcatgttgcgcaacaaatcctaagttttgtttcactgattttgaga |
35769875 |
T |
|
| Q |
217 |
gtggttttccattgtaagttatttatggttccttttgttctcatttaatctgcctcctaaagcatttattagagttgatttgccactgcctgaagggcct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35769874 |
gtggttttccattgtaagttatttatggttccttttgttctcatttaatctgcctcctaaagcatttattagagttgatttgccactgcctgaagggcct |
35769775 |
T |
|
| Q |
317 |
aaaattgctaacaattcacccggaaatacaatgccaataatccctttcaagattagtttctcctcagaatttatagcctttttgcataacaagcctttgc |
416 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35769774 |
aaaattactaacaattcacccggaaatacaatgccaataatccctttcaagattagtttctcctcagaatttatagcctttttgcataacaagcctttgc |
35769675 |
T |
|
| Q |
417 |
tt |
418 |
Q |
| |
|
|| |
|
|
| T |
35769674 |
tt |
35769673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University