View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4181_low_6 (Length: 218)
Name: NF4181_low_6
Description: NF4181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4181_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 17734662 - 17734464
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17734662 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17734563 |
T |
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| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
17734562 |
cggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17734464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 17743902 - 17743704
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17743902 |
agcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
17743803 |
T |
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| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
17743802 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17743704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 16720678 - 16720480
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
16720678 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
16720579 |
T |
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| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
16720578 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
16720480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 17697692 - 17697494
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
17697692 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagc |
17697593 |
T |
|
| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
17697592 |
cggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
17697494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 17716611 - 17716413
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
17716611 |
agcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagc |
17716512 |
T |
|
| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| |
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| T |
17716511 |
cggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt |
17716413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 16729551 - 16729353
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
| |
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|||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |
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| T |
16729551 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
16729452 |
T |
|
| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
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| T |
16729451 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
16729353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 17706623 - 17706425
Alignment:
| Q |
12 |
agcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagc |
111 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |
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| T |
17706623 |
agcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagc |
17706524 |
T |
|
| Q |
112 |
cggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttgatgatgt |
210 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
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| T |
17706523 |
tggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
17706425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
| Q |
56 |
ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat |
121 |
Q |
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|||||||| || ||||||||| ||||||||| | ||||||||| ||||||||||| |||||||| |
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| T |
46497451 |
ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat |
46497386 |
T |
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