View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4182_high_1 (Length: 571)
Name: NF4182_high_1
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4182_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 16565307 - 16564747
Alignment:
| Q |
8 |
aagcaaagggacattccatcattcctagcnnnnnnngtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaat |
107 |
Q |
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| T |
16565307 |
aagcaaagggacattccatcattcctagcaaaaaaagtactttattaaacaattaaagtcgatattaaaggcttaaagcaacccatgcatgcccaccaat |
16565208 |
T |
|
| Q |
108 |
gcaactgcaatgatggcactcagagtggaaatggagtcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcata |
207 |
Q |
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| T |
16565207 |
gcaactgcaatgatggcactgagagtggaaatggagtcttttaagggtaaaaagcttataaaaacaattatgacaacgaatttgatcttagtttgtcata |
16565108 |
T |
|
| Q |
208 |
ttggtgcatgatatat---------tgcacagaactgtagttaaatatgacttatattattgcaatgacataatttatttatgtacannnnnnnaagtat |
298 |
Q |
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| T |
16565107 |
ttggtgcatgatatatgatatatattgcacaaaactgtagttaaatatgacttatattattgcaatgacataatttttttatgtacatttttttaactat |
16565008 |
T |
|
| Q |
299 |
ttttgtggtattcttcttaaaatattcataattaactatactataatttctctattaaatcaatcattttctcaaaatgcacaaaaaa-cagatcgaaag |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16565007 |
ttttgtggtattcttcttaaaatattcataattaactatactataatttttctattaaatcaatcattttctcaaaatgcacaaaaaaacagatcgaaag |
16564908 |
T |
|
| Q |
398 |
acatctaaattttgtctttgttgcaattgcagttgtaaatatggttctaaatttgaggtttagtcacacttgcaattaaactctagggtacggaagatgt |
497 |
Q |
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| T |
16564907 |
acatctaaattttgtctttgttgcaattgcagttgtaaatatggttctaaatttgaggtttagtcacacttgcaattaaactctagggtacggaagatgt |
16564808 |
T |
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| Q |
498 |
caccatcattaaaatttccttgcaaatgtgaag---agtggataggatgatatatacatgt |
555 |
Q |
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| T |
16564807 |
caccatcattaaaatttccttgcaaatgtgaagggtggtggataggatgatatatacatgt |
16564747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 52822524 - 52822457
Alignment:
| Q |
82 |
aaagcaacccatgcatgcccaccaatgcaactgcaatgatggcactcagagtggaaatggagtctttt |
149 |
Q |
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| T |
52822524 |
aaagcaacctatgcatccccaccaactcagctgcaataatgacactaagagtggaagtggagtctttt |
52822457 |
T |
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