View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4182_high_5 (Length: 250)
Name: NF4182_high_5
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4182_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 24607486 - 24607670
Alignment:
| Q |
1 |
cccaatagtggaaactgatgtatgacattggataacgccaaacaggctttgggatatcatgtgggagcctaaagtagccagagaccaacatgaagatacc |
100 |
Q |
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| T |
24607486 |
cccaatagtggaaactgatgtatgacattggataacgccaaacaggctttgggatatcatgtgggagcctaaagtagccagagaccaacatgaagatacc |
24607585 |
T |
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| Q |
101 |
ctgaaatttggaaagtagtaatcaaaaatataattaaaaggtatcataacaagtgtggattttgtaacaaaacacttggtaaatg |
185 |
Q |
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| T |
24607586 |
ctgaaatttggaaagtagtaatcaaaaatataattaaaaggtatcataacaagtgtggattttgtaacaaaacacttggtaaatg |
24607670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 24608401 - 24608434
Alignment:
| Q |
209 |
gcatgcaattagtagaatgtcatttagtataatc |
242 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
24608401 |
gcatacaattagtagaatgtcatttagtataatc |
24608434 |
T |
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