View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4182_high_8 (Length: 235)
Name: NF4182_high_8
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4182_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 36752751 - 36752901
Alignment:
| Q |
51 |
gtctagctaagttcaattttccaaatatttgatgtcatgcaaatattttatcattgaggaatataaaaattctttcatggtgtggagctctaaatgtttt |
150 |
Q |
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| T |
36752751 |
gtctagctaagttcaattttccaaatatttgatgtcatgcaaatattttatcattgaggaatataaaaattctttcatggtgtggagctctaaatgttct |
36752850 |
T |
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| Q |
151 |
gaagtggagtggtatgaattacaattcttaatatatagaactcataataga |
201 |
Q |
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| T |
36752851 |
gaagtggagtggtatgaattacaattcttaatatatagaactcataataga |
36752901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 36752678 - 36752710
Alignment:
| Q |
20 |
gtaaccaaatcccatgatgctcccactttgtgt |
52 |
Q |
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| T |
36752678 |
gtaaccaaatcccatgatgctcccactttgtgt |
36752710 |
T |
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