View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4182_low_4 (Length: 322)
Name: NF4182_low_4
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4182_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 8404585 - 8404880
Alignment:
| Q |
10 |
catcatcaaccaatattaggaaggccatacattgacatgaagacactctatagtattggaaaggaactagggaggggtcaatttggtgtcacttatcttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8404585 |
catcatcaaccaatattaggaaggccatacattgacatgaagacactctatagtattggaaaggaactagggaggggtcaatttggtgtcacttatcttt |
8404684 |
T |
|
| Q |
110 |
gtaccgaaaatgccaccggaagaaactatgcttgtaagtccatttcgagacgaaagctaacaagaaagaaagaaattgaggatgttaaaagggaaatcat |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8404685 |
gtaccgaaaatgccactggaagaaactatgcttgtaagtccatttcgagacgaaagctaacaagaaagaaagaaattgaggatgttaaaagggaaatcat |
8404784 |
T |
|
| Q |
210 |
gatccttcaggacttaagtggacaaccaaacatagttgagttcaagggtgcttatgaggatagagagagtgtgcatttggtgatggagttgtgttt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8404785 |
gatccttcaggacttaagtggacaaccaaacatagttgagttcaagggtgcttatgaggatagagagagtgtgcatttggtgatggagttgtgttt |
8404880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 40531981 - 40532026
Alignment:
| Q |
226 |
agtggacaaccaaacatagttgagttcaagggtgcttatgaggata |
271 |
Q |
| |
|
|||||||||||||| || |||||||| || |||||||||||||||| |
|
|
| T |
40531981 |
agtggacaaccaaatattgttgagtttaaaggtgcttatgaggata |
40532026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 40536946 - 40536990
Alignment:
| Q |
226 |
agtggacaaccaaacatagttgagttcaagggtgcttatgaggat |
270 |
Q |
| |
|
|||||||||||||| || |||||||| || ||||||||||||||| |
|
|
| T |
40536946 |
agtggacaaccaaatattgttgagtttaaaggtgcttatgaggat |
40536990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University