View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4182_low_6 (Length: 267)

Name: NF4182_low_6
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4182_low_6
NF4182_low_6
[»] chr4 (3 HSPs)
chr4 (167-255)||(51006269-51006353)
chr4 (18-75)||(51006028-51006085)
chr4 (87-170)||(51006122-51006212)
[»] chr7 (2 HSPs)
chr7 (167-252)||(38741306-38741387)
chr7 (41-76)||(38741577-38741612)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 51006269 - 51006353
Alignment:
Q  167 aaatttggaatttttcctatatatgcttagttattctatgtgatttacttataaaaaagaaaattgcaggtatttctagatctatagta 255  Q
    ||||||||||||||||||||    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51006269 aaatttggaatttttcctat----gcttaattattctatgtaatttacttataaaaaagaaaattgcaggtatttctagatctatagta 51006353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 51006028 - 51006085
Alignment:
Q  18 acttcttggcttgtttgcgtctatgcaacatgaaatgtacaattaataaaccaatggg 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51006028 acttcttggcttgtttgcgtctatgcaacatgaaatgtacaattaataaaccaatggg 51006085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 51006122 - 51006212
Alignment:
Q  87 taatgagtacataactggattaagtacataatatatttcatggataatg--------atggaatagttatatagatagcgagaaaaagaaat 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||    
T  51006122 taatgagtacataactg-attaagtacataatatatttcatggataatgatggaataatggaatagttatatagatagcgagaaaaataaat 51006212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 38741387 - 38741306
Alignment:
Q  167 aaatttggaatttttcctatatatgcttagttattctatgtgatttacttataaaaaagaaaattgcaggtatttctagatctata 252  Q
    |||| ||||||||||||    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  38741387 aaatctggaatttttcc----tatgcttagttattctatatgatttacttataaaaaataaaattgcaggtatttctagatctata 38741306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 38741612 - 38741577
Alignment:
Q  41 tgcaacatgaaatgtacaattaataaaccaatggga 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  38741612 tgcaacatgaaatgtacaattaataaaccaatggga 38741577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University