View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4182_low_9 (Length: 249)

Name: NF4182_low_9
Description: NF4182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4182_low_9
NF4182_low_9
[»] chr7 (11 HSPs)
chr7 (13-249)||(25635824-25636060)
chr7 (13-186)||(39653440-39653613)
chr7 (13-179)||(47363694-47363859)
chr7 (100-167)||(10493372-10493439)
chr7 (83-164)||(31742971-31743053)
chr7 (73-186)||(33049199-33049312)
chr7 (19-107)||(10493472-10493560)
chr7 (95-166)||(7493067-7493138)
chr7 (29-92)||(45435421-45435484)
chr7 (143-187)||(35451049-35451093)
chr7 (126-167)||(45435550-45435591)
[»] chr3 (5 HSPs)
chr3 (13-220)||(11783353-11783563)
chr3 (14-160)||(7299122-7299267)
chr3 (13-61)||(21926543-21926591)
chr3 (126-165)||(53527191-53527230)
chr3 (73-158)||(46475662-46475750)
[»] chr2 (7 HSPs)
chr2 (14-184)||(17988973-17989142)
chr2 (17-180)||(37794641-37794803)
chr2 (62-185)||(5430210-5430333)
chr2 (89-179)||(19263821-19263911)
chr2 (105-177)||(35016316-35016388)
chr2 (13-94)||(35016457-35016537)
chr2 (139-176)||(20929880-20929917)
[»] chr4 (10 HSPs)
chr4 (13-180)||(38411858-38412025)
chr4 (13-177)||(28146996-28147159)
chr4 (13-180)||(55606236-55606402)
chr4 (13-184)||(25968013-25968183)
chr4 (15-186)||(13198064-13198234)
chr4 (13-67)||(11440602-11440656)
chr4 (100-186)||(11440664-11440753)
chr4 (30-135)||(46308386-46308491)
chr4 (130-186)||(29866152-29866208)
chr4 (190-232)||(28147186-28147228)
[»] chr8 (6 HSPs)
chr8 (13-177)||(23489962-23490125)
chr8 (91-188)||(13402173-13402270)
chr8 (98-211)||(13396882-13396995)
chr8 (13-136)||(7154302-7154425)
chr8 (118-165)||(14370801-14370848)
chr8 (14-67)||(14867355-14867408)
[»] chr1 (5 HSPs)
chr1 (29-181)||(12990544-12990695)
chr1 (13-181)||(34664792-34664959)
chr1 (13-181)||(32617559-32617725)
chr1 (13-184)||(9457631-9457798)
chr1 (13-184)||(9461728-9461895)
[»] chr6 (5 HSPs)
chr6 (39-167)||(9177634-9177759)
chr6 (60-184)||(26660602-26660726)
chr6 (60-184)||(26766573-26766697)
chr6 (16-92)||(10117185-10117259)
chr6 (13-70)||(32296377-32296434)
[»] chr5 (9 HSPs)
chr5 (13-216)||(39426042-39426246)
chr5 (15-165)||(13424644-13424790)
chr5 (29-174)||(41283521-41283664)
chr5 (13-162)||(22927072-22927222)
chr5 (73-184)||(36491559-36491670)
chr5 (15-112)||(19967521-19967612)
chr5 (14-187)||(20141520-20141704)
chr5 (139-186)||(37247653-37247700)
chr5 (13-50)||(36491508-36491545)
[»] scaffold0191 (1 HSPs)
scaffold0191 (139-180)||(30867-30908)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 25636060 - 25635824
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25636060 agatgaaaatcatatctttagtacatatttaatcataaattacataatgttatctccttgtctagtttagaactccaaatctatctttagtttaagttat 25635961  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagacgaaattgcaaaatcctatacgt 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  25635960 ttacattattatcattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaatcctatacgt 25635861  T
Q  213 gaccgcgaacctgaccgttatttaaaaccttaactaa 249  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25635860 gaccgcgaacctgacctttatttaaaaccttaactaa 25635824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 39653613 - 39653440
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    ||||||| || |||| |||||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||| | ||| | |||||||||||||    
T  39653613 agatgaacatcatatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaactttatatctagtttaagttat 39653514  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 186  Q
    |||| ||  || ||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||    
T  39653513 ttacgttgctatcattatttaagagttgtggaatattgtgattaattcacaccgcaacaaccacaatccataac 39653440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 47363859 - 47363694
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||  |||| |||||||||||||| |||||| ||||||||| ||||||||||  |||||||||||||| ||||||| ||| |||||||||||||    
T  47363859 agatgaaaagcatatttttagtacatatttgatcatagattacataa-gttatctccttatctagtttagaacttcaaatctttctctagtttaagttat 47363761  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 179  Q
    |||  |||||| ||||||||||||  ||||||||||| |||||||||||||||   |||||||||||    
T  47363760 ttaagttattatcattatttaagacttgtgcaatgttttgattaattcacaccaagacaaccgcaat 47363694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 10493439 - 10493372
Alignment:
Q  100 tagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgc 167  Q
    ||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  10493439 tagtttaagttatttacgttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgc 10493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 31742971 - 31743053
Alignment:
Q  83 aactccaaatctatctttagtttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacac 164  Q
    |||| ||||||||||| || |||||||||||||  |||||| |||||||||||||  ||||||||||||||||||||||||||    
T  31742971 aacttcaaatctatctctaatttaagttatttaagttattatacattatttaagaactgtgcaatgttgtgattaattcacac 31743053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 33049199 - 33049312
Alignment:
Q  73 tctagtttagaactccaaatctatctttagtttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacaccgcaaca 171  Q
    ||||||||| |||| ||||||||||| || || ||||||||||  |||||| |||||||||||||| ||||||||||| ||||||||||||||| | ||     
T  33049199 tctagttta-aacttcaaatctatctctatttcaagttatttaagttattatacattatttaagagttgtgcaatgttttgattaattcacacctcgacg 33049297  T
Q  172 accgcaatccgtaac 186  Q
    ||| |||||| ||||    
T  33049298 accacaatccataac 33049312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 10493560 - 10493472
Alignment:
Q  19 aaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaa 107  Q
    |||| |||| |||| | ||||||| |||||||||||||||||||||||||||  | ||||||||| ||||||||| |||| ||||||||    
T  10493560 aaatcatatttttaatgcatatttgatcataaattacataatgttatctccttatatagtttagacctccaaatccatctctagtttaa 10493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 7493138 - 7493067
Alignment:
Q  95 atctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccg 166  Q
    |||| |||||||| |||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||    
T  7493138 atctctagtttaaattatttacgttactatcattatttaagagttgtgtaatgttgtgattaattcacaccg 7493067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 45435421 - 45435484
Alignment:
Q  29 tttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaat 92  Q
    |||||||||||||| ||||||||||||||||||||||||| |  |||||||||||||| |||||    
T  45435421 tttagtacatatttgatcataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 35451093 - 35451049
Alignment:
Q  143 caatgttgtgattaattcacaccgcaacaaccgcaatccgtaaca 187  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  35451093 caatgttgtgattaattcacaccgcaacaatggcaatccgtaaca 35451049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 45435550 - 45435591
Alignment:
Q  126 attatttaagaggtgtgcaatgttgtgattaattcacaccgc 167  Q
    |||||||||||| |||||||| |||| |||||||||||||||    
T  45435550 attatttaagagttgtgcaatattgttattaattcacaccgc 45435591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 11783563 - 11783353
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| | ||||||||| |    
T  11783563 agatgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaatctatctcttgtttaagttct 11783464  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac---agacgaaattgcaaaatcctata 209  Q
    |||  ||| || ||||||||||||| ||||||||||||| |||| ||||||  || |||||| |||||||||||   || | |||| || ||||||||||    
T  11783463 ttatgttactatcattatttaagagttgtgcaatgttgtaattacttcacaaagcgacaaccacaatccgtaacgcaagccaaaatagcgaaatcctata 11783364  T
Q  210 cgtgaccgcga 220  Q
    | |||||||||    
T  11783363 cttgaccgcga 11783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 7299122 - 7299267
Alignment:
Q  14 gatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatt 113  Q
    ||||||||  |||| || |||||||||||||||||||||||||||||||||||||||  |||| ||||||| | ||||||||||| ||||||||||||||    
T  7299122 gatgaaaaccatattttaagtacatatttaatcataaattacataatgttatctccttatctactttagaa-ttcaaatctatctctagtttaagttatt 7299220  T
Q  114 tacattattaacattatttaagaggtgtgcaatgttgtgattaattc 160  Q
    ||| ||| || | ||||||||||| ||| |||||||||| |||||||    
T  7299221 tacgttactatcgttatttaagagttgtacaatgttgtggttaattc 7299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 21926591 - 21926543
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatg 61  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||    
T  21926591 agatgaaaatcatattttcagtacatatttaatcataaattacataatg 21926543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 53527191 - 53527230
Alignment:
Q  126 attatttaagaggtgtgcaatgttgtgattaattcacacc 165  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  53527191 attatttaaaagttgtgcaatgttgtgattaattcacacc 53527230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 46475662 - 46475750
Alignment:
Q  73 tctagtttagaactccaaatctatctttagtttaag--ttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaat 158  Q
    ||||||||||| || ||||||||| | || ||||||  ||||||| ||||| | |||||||||||||| | ||||||||||||| ||||    
T  46475662 tctagtttagagcttcaaatctatttctaatttaagagttatttaaattataatacattatttaagagttttgcaatgttgtgaataat 46475750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 17989142 - 17988973
Alignment:
Q  14 gatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatt 113  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||||| |||||||||  |||||||||||||||||||||| | | ||||||||||||||    
T  17989142 gatgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagtttagaactccaaatctttttctagtttaagttatt 17989044  T
Q  114 tacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 184  Q
    ||  ||| || ||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||||||    
T  17989043 taagttactatcattatttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatccgta 17988973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 37794803 - 37794641
Alignment:
Q  17 gaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttac 116  Q
    |||||| |||| |||||||||||||| |||||||||||||||| ||||||||||  |||||||||||||||||||||| ||| | || |||||||| ||     
T  37794803 gaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttctctggtctaagttatctaa 37794705  T
Q  117 attattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 180  Q
     ||| || ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  37794704 gttactatcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaatc 37794641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 5430210 - 5430333
Alignment:
Q  62 ttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattca 161  Q
    |||||||||  |||| ||||||| ||||| ||||||| ||||||||||||||||  ||| || ||||||||||||| |||||||| ||||||||||||||    
T  5430210 ttatctccttatctactttagaaatccaactctatctctagtttaagttatttatgttactatcattatttaagagttgtgcaatattgtgattaattca 5430309  T
Q  162 caccgcaacaaccgcaatccgtaa 185  Q
    |||||| |||||| ||||| ||||    
T  5430310 caccgcgacaaccacaatctgtaa 5430333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 19263821 - 19263911
Alignment:
Q  89 aaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 179  Q
    |||||||||| |||| |||||||||||  ||| || ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  19263821 aaatctatctctagtataagttatttatgttactatcattatttaagaattgtgcaatgttgtgattaattcacagcgcaacaaccgcaat 19263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 35016388 - 35016316
Alignment:
Q  105 taagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgca 177  Q
    |||||||||||  ||| || ||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  35016388 taagttatttaagttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgca 35016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 35016537 - 35016457
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatct 94  Q
    |||||||||| |||| |||  ||||||||| ||||||||||| |||| ||||||||||  |||||||||||| |||||||||    
T  35016537 agatgaaaatcatatttttgatacatatttgatcataaattatataa-gttatctccttatctagtttagaattccaaatct 35016457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 20929880 - 20929917
Alignment:
Q  139 tgtgcaatgttgtgattaattcacaccgcaacaaccgc 176  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  20929880 tgtgcattgttgtgattaattcacaccgcgacaaccgc 20929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 38412025 - 38411858
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||| |||||| || || ||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||| |||||||||    
T  38412025 agatgaaaatcatatttttactacatacttgattataaattacataatgttatttccttatctagtttagaactccaaatctatctctaggttaagttat 38411926  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 180  Q
    |||||||  || |||| ||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  38411925 ttacattcctatcattgtttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 38411858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 28146996 - 28147159
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||  |||| ||||||| ||||||||| ||  |||||||||||||    
T  28146996 agatgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctaatttagaattccaaatctttccctagtttaagttat 28147094  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgca 177  Q
    |||  ||  ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  28147095 ttaagttgataatattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgca 28147159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 55606402 - 55606236
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||| ||||| ||||  | |||||||||||||||||||| ||| |||||||||||||    
T  55606402 agatgaaaattatatttttagtacatatttgatcataaattacataa-gttatttccttatatagtttagaactccaaatctttctctagtttaagttat 55606304  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 180  Q
    |||  ||| || ||||||||||||| |||||||||||||||||||||||||  || ||||||| ||||    
T  55606303 ttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaatgcgacaaccgtaatc 55606236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 25968013 - 25968183
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||| ||| |||| ||| |||||||||| || ||||||||||||| ||||||| ||  |||||||||||||  || |||| ||| |||||||||||||    
T  25968013 agatgataatcatatttttggtacatatttgataataaattacataa-gttatcttcttatctagtttagaacgtcagatctttctctagtttaagttat 25968111  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 184  Q
     ||  | | || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25968112 gtaagtgactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaatccgta 25968183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 13198234 - 13198064
Alignment:
Q  15 atgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttattt 114  Q
    |||||||| ||||  ||||| ||||||| |||||||||||||||| ||||||||||  |||| ||||||||||||||||| | | |||||||||||||      
T  13198234 atgaaaatcatattcttagtgcatatttgatcataaattacataa-gttatctccttatctaatttagaactccaaatctttgtctagtttaagttatca 13198136  T
Q  115 acattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 186  Q
    |  |||  | |||| |||||||| ||||||||||||||||||||||||||||| |||| | |||||| ||||    
T  13198135 aagttacgatcattgtttaagagttgtgcaatgttgtgattaattcacaccgcgacaatcacaatccttaac 13198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 11440602 - 11440656
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatct 67  Q
    |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  11440602 agatgaaaatcatatttttagtacatatttgatcataaattacataatgttatct 11440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 11440664 - 11440753
Alignment:
Q  100 tagtttaagttatttacattattaacatta---tttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 186  Q
    ||||||||||||||||||||| || |||||   |||||||| ||  ||||||||||||||||||||||||| |||||  |||||| ||||    
T  11440664 tagtttaagttatttacattactatcattattatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataac 11440753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 46308491 - 46308386
Alignment:
Q  30 ttagtacatatttaatcataaattacataatgttatctcc-tagtctagtttagaactccaaatctatct-ttagtttaagttatttacattattaacat 127  Q
    ||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||| |||||| ||| | | |||||||||||||  ||| || |||    
T  46308491 ttagtacatatttgatcataaattacataa-gttatctccttagt-tagtttagaactctaaatctctctctcaatttaagttatttaagttactatcat 46308394  T
Q  128 tatttaag 135  Q
    ||||||||    
T  46308393 tatttaag 46308386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 29866152 - 29866208
Alignment:
Q  130 tttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 186  Q
    |||||||  ||||||||||||||||||||||||||| | |||||| ||||| |||||    
T  29866152 tttaagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaac 29866208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 28147186 - 28147228
Alignment:
Q  190 cgaaattgcaaaatcctatacgtgaccgcgaacctgaccgtta 232  Q
    |||||||||||||||||||| |||||||||| | |||||||||    
T  28147186 cgaaattgcaaaatcctatatgtgaccgcgaccgtgaccgtta 28147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 23490125 - 23489962
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||||  |||||||||||||||||||||| ||| ||||||| ||| |    
T  23490125 agatgaaaatcatatttttcgtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttctctagtttatgttgt 23490027  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgca 177  Q
     ||  ||| || || |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23490026 ctaagttactatcagtatttaagagttgtacaatgttgtgattaattcacaccgcaacaaccgca 23489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 13402173 - 13402270
Alignment:
Q  91 atctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacag 188  Q
    |||||| ||||||||||||||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  13402173 atctatttttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaatccgtaacag 13402270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 13396882 - 13396995
Alignment:
Q  98 tttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagacgaaattg 197  Q
    ||||||||||||||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||| ||||||  ||||| |    
T  13396882 tttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacagccgcaatccataacagctgaaatcg 13396981  T
Q  198 caaaatcctatacg 211  Q
    ||||||| ||||||    
T  13396982 caaaatcttatacg 13396995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 7154425 - 7154302
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||| ||||||||| |||||| ||||||||||  ||||||||  |||  || ||||||| |||||||||| | |||||||||||    
T  7154425 agatgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttatctgattcagaactcaaaatctatctatggtttaagttat 7154326  T
Q  113 ttacattattaacattatttaaga 136  Q
    ||||  ||||| ||||||||||||    
T  7154325 ttacggtattatcattatttaaga 7154302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 14370801 - 14370848
Alignment:
Q  118 ttattaacattatttaagaggtgtgcaatgttgtgattaattcacacc 165  Q
    |||||| |||||  |||||| |||||||||||||||||||||||||||    
T  14370801 ttattatcattaagtaagagttgtgcaatgttgtgattaattcacacc 14370848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 14867408 - 14867355
Alignment:
Q  14 gatgaaaataatatctttagtacatatttaatcataaattacataatgttatct 67  Q
    ||||||||| | || |||||||||||||| | |||||||||||| |||||||||    
T  14867408 gatgaaaatcacatttttagtacatatttgaacataaattacatgatgttatct 14867355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 12990544 - 12990695
Alignment:
Q  29 tttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacatt 128  Q
    |||| ||||||||| ||||||||||||||||| |||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||  ||| || ||||    
T  12990544 tttaatacatatttgatcataaattacataat-ttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttaagttactatcatt 12990642  T
Q  129 atttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatcc 181  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||    
T  12990643 atttaagagttgtgcaatgttgtgactaattcacaccgcgacaactgcaatcc 12990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 34664792 - 34664959
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||||||| ||||| |||||||||||||||| ||||||| ||  ||||||||||||||||| |||| ||| |||||||||||||    
T  34664792 agatgaaaatcatat-tttagtacgtatttgatcataaattacataacgttatcttcttatctagtttagaactccatatctgtctatagtttaagttat 34664890  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatcc 181  Q
    |||| ||| || |||||||||| || ||||||||||||| ||||||||| ||||  |||||| ||||||    
T  34664891 ttacgttactatcattatttaaaagttgtgcaatgttgtaattaattcataccgtgacaaccacaatcc 34664959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 32617725 - 32617559
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||| |||  | ||| |||||||||||||    
T  32617725 agatgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagttta-aactctaaagatttctctagtttaagttat 32617628  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatcc 181  Q
    | |  ||| || | ||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  32617627 tcaagttactatcgttatttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaatcc 32617559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 9457631 - 9457798
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||| ||||| |||| |||  ||||||| | ||||||||||||  || ||||||||||   || ||||||||||| ||||||   | |||||||||||||    
T  9457631 agataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---tctagtttaagttat 9457726  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 184  Q
    |||  ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9457727 ttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 9457798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 9461728 - 9461895
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||| ||||| |||| |||  ||||||| | ||||||||||||  || ||||||||||   || ||||||||||| ||||||   | |||||||||||||    
T  9461728 agataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---tctagtttaagttat 9461823  T
Q  113 ttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 184  Q
    |||  ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9461824 ttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgta 9461895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 9177634 - 9177759
Alignment:
Q  39 atttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagagg 138  Q
    |||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||     
T  9177634 atttgatcataaattacataatgttatctcac---ctagtttagaactccaaatctatctttagtttaagttatttacgttactatcattattcaagagt 9177730  T
Q  139 tgtgcaatgttgtgattaattcacaccgc 167  Q
    |||||||||||||||||||||||||||||    
T  9177731 tgtgcaatgttgtgattaattcacaccgc 9177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 26660726 - 26660602
Alignment:
Q  60 tgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaatt 159  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||  ||| ||   | ||||||||| |||||||||||||||||||||    
T  26660726 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26660627  T
Q  160 cacaccgcaacaaccgcaatccgta 184  Q
    |||||||  ||||||||||| ||||    
T  26660626 cacaccgtgacaaccgcaattcgta 26660602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 26766697 - 26766573
Alignment:
Q  60 tgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaatt 159  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||  ||| ||   | ||||||||| |||||||||||||||||||||    
T  26766697 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26766598  T
Q  160 cacaccgcaacaaccgcaatccgta 184  Q
    |||||||  ||||||||||| ||||    
T  26766597 cacaccgtgacaaccgcaattcgta 26766573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 10117185 - 10117259
Alignment:
Q  16 tgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaat 92  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||  | |||||||  ||||||||||||||||||||    
T  10117185 tgaaaatcatatttttagtacatatttgatcataaattacataa--taatctccttatctagtttagaactccaaat 10117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 32296377 - 32296434
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcct 70  Q
    |||||||||| |||| |||||||||||||| ||||||| |||||||||| ||||||||    
T  32296377 agatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctcct 32296434  T

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Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 39426246 - 39426042
Alignment:
Q  13 agatgaaaataatatcttt-agtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagtta 111  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||||||| |||||||  | |||||||||| ||||||| ||||| || |||||||||    
T  39426246 agatgaaaatcatatattttagtacatatttgatcataaattacataatgtcatctccttatatagtttagaa-tccaaatatatctata-tttaagtta 39426149  T
Q  112 tttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaa--tccgtaacagacgaaattgcaaaatcctata 209  Q
    ||||||||| || || ||| || ||| ||||||||||||| ||||||||||||||| |||||  |||  |||||||||| |||||| |  |||| |||||    
T  39426148 tttacattactatcaatatgtatgagttgtgcaatgttgtaattaattcacaccgcgacaactacaacgtccgtaacagtcgaaatcgtcaaattctata 39426049  T
Q  210 cgtgacc 216  Q
    || ||||    
T  39426048 cgcgacc 39426042  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 13424790 - 13424644
Alignment:
Q  15 atgaaaataatatctttagtacatatttaatcataaattacataatgttatctcc-tagtctagtttagaactccaaatctatctttagtttaagttatt 113  Q
    ||||||||||||| |||||||||||||| ||||||||| || ||| ||||||||| || |||| ||||||| || |||||| ||| || |||||||||||    
T  13424790 atgaaaataatatttttagtacatatttgatcataaatcacgtaa-gttatctccttaatctattttagaattctaaatctttctctattttaagttatt 13424692  T
Q  114 tacattattaacattatttaagaggtgtgcaatgttgtgattaattcacacc 165  Q
    ||    | |  ||||||||||||| |||||||||||||||||||||||||||    
T  13424691 ta----agtttcattatttaagagttgtgcaatgttgtgattaattcacacc 13424644  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 41283521 - 41283664
Alignment:
Q  29 tttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacatt 128  Q
    ||||||||| || | ||||||||||| |||| ||||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||  ||| || | ||    
T  41283521 tttagtacaaatctgatcataaatta-ataa-gttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttatgttactatcttt 41283618  T
Q  129 atttaagaggtgtgcaatgttgtgattaattcacaccgcaacaacc 174  Q
    ||| || || ||||||||||||||||||||||||||| | ||||||    
T  41283619 attcaaaagttgtgcaatgttgtgattaattcacaccacgacaacc 41283664  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 22927222 - 22927072
Alignment:
Q  13 agatgaaaataatatctttagtacata--tttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagtt 110  Q
    |||||||||| |||| ||| ||||| |  ||| ||||||||| ||||| ||||||||| | ||||||||||||||  | ||||||||| |||||||||||    
T  22927222 agatgaaaatcatattttttgtacacacatttgatcataaatcacata-tgttatctcattgtctagtttagaacctcgaatctatctctagtttaagtt 22927124  T
Q  111 atttacattattaacattatttaagaggtgtgcaatgttgtgattaattcac 162  Q
    |||||  ||| |  ||||||||||||| || |||||||||||||||||||||    
T  22927123 atttatgttactttcattatttaagagttgggcaatgttgtgattaattcac 22927072  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 36491559 - 36491670
Alignment:
Q  73 tctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaa 172  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||| ||| || ||| ||||||||  | ||||||||| ||||||||||||||||  ||||    
T  36491559 tctagtttagaactcaaaatctatctctagtttatgttatttactttactatcatcatttaagaattttgcaatgttatgattaattcacaccgtgacaa 36491658  T
Q  173 ccgcaatccgta 184  Q
    ||| ||||||||    
T  36491659 ccgtaatccgta 36491670  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 19967521 - 19967612
Alignment:
Q  15 atgaaaataatatctttagtacatatttaatcataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttat 112  Q
    |||||||| |||| ||||||||||||     |||||||||| ||| |||  ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  19967521 atgaaaatcatatttttagtacatat-----cataaattacctaa-gttgactccttgtctagtttagaactccaaatctttctttagtttaagttat 19967612  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 20141704 - 20141520
Alignment:
Q  14 gatgaaaataatatctttagtacatatttaatcataaattacataatgttatctcc--tag--------tctagtttagaactccaaatctatctttagt 103  Q
    ||||||||| ||||||||| |||| |||| | ||||||||||||||| ||||||||  |||        |||| || | || | ||||||||||| || |    
T  20141704 gatgaaaatcatatctttattacagatttgaacataaattacataattttatctcctttaggctctttctctaattgaaaatttcaaatctatctctaat 20141605  T
Q  104 ttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaaca 187  Q
    ||||||| ||||  |||||| ||||||||||||||  ||||  ||||||||||||||||||||   |||| |||||||| |||||    
T  20141604 ttaagttgtttaagttattatacattatttaagagtagtgcgttgttgtgattaattcacaccatgacaatcgcaatccataaca 20141520  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 37247653 - 37247700
Alignment:
Q  139 tgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 186  Q
    |||||| |||||||||||||||||||||| |||||| ||||| |||||    
T  37247653 tgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaac 37247700  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 36491508 - 36491545
Alignment:
Q  13 agatgaaaataatatctttagtacatatttaatcataa 50  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  36491508 agatgaaaatcatatttttagtacatatttaatcataa 36491545  T

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Target: scaffold0191 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 30867 - 30908
Alignment:
Q  139 tgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 180  Q
    |||||| ||||||||||||||||||| ||||||||| |||||    
T  30867 tgtgcattgttgtgattaattcacactgcaacaaccacaatc 30908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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