View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_high_1 (Length: 603)
Name: NF4183_high_1
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 39 - 479
Target Start/End: Complemental strand, 42956533 - 42956093
Alignment:
| Q |
39 |
gtaggatgtgtactatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcactcacataatctctttaa |
138 |
Q |
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| T |
42956533 |
gtaggatgtgtactatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcacacacataatctctttaa |
42956434 |
T |
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| Q |
139 |
ttatgaaaggaaaaaataagtttggttaaagcaactagcattttcatgatttttgaattactaaggatagtagcggtaacatcagtaacaatgatgtctc |
238 |
Q |
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| T |
42956433 |
ttatgaaaggaaaaaataagtttggttaaagcaactagcattttcatgatttttgaattactaaggatagtagtggtaacatcagtaacaatgatgtctc |
42956334 |
T |
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| Q |
239 |
aataccgcagaaaaacatattgatgaacgactgcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgttggtgaagacaatc |
338 |
Q |
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| T |
42956333 |
aataccgcagaaaaacatattgatgaaagacagcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgtcggtgaagacaatc |
42956234 |
T |
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| Q |
339 |
gagctaacttgttaaccaaggtggttcctagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtg |
438 |
Q |
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| T |
42956233 |
gagctaacttgttaaccaaggtggttcccagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtg |
42956134 |
T |
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| Q |
439 |
aacactttaggctatcactatcttaattcattgtgtttcag |
479 |
Q |
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| T |
42956133 |
aacactttaggctatcactatcttaattcattgtgtttcag |
42956093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 506 - 592
Target Start/End: Complemental strand, 42956095 - 42956009
Alignment:
| Q |
506 |
caggatcattaattgtgtttacaatttaccaagttagtttttgcttatgttttttataaaagctgttgcgataacatctttgttcat |
592 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42956095 |
caggatcactaattgtgtttacaatttaccaagttagattttgcctatgttttttataaaagctgttgcgataacatctttgttcat |
42956009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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