View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4183_high_10 (Length: 356)
Name: NF4183_high_10
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 40 - 339
Target Start/End: Original strand, 46450949 - 46451247
Alignment:
| Q |
40 |
tacacactacgtggaaccataatatccctcacaatgctttccatttcattctatataaacaaccttcttcaatgctatacctaccaaccttaaccatcta |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46450949 |
tacacactacgtggaaccataatatccctcacaatgcattccatttcattctatataaacaaccttcttcaatgctatacctaccaaccttaaccatcta |
46451048 |
T |
|
| Q |
140 |
aatctaaggtgtagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacacttttgttgttgtaacattaagaactt |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46451049 |
aatctaaggtgtagtgaagttaaacagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacac-tttgttgttgtaacattaagaactt |
46451147 |
T |
|
| Q |
240 |
gttatcaatggctgtttcatcttatcaatctatcatgtctagccccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatccct |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451148 |
gttatcaatggctgtttcatcttatcaatctatcatgtctagctccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatccct |
46451247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 38 - 339
Target Start/End: Complemental strand, 46345722 - 46345421
Alignment:
| Q |
38 |
gttacacactacgtggaaccataatatccctcacaatgctttccatttcattctatataaacaaccttcttcaatgctatacctaccaa-ccttaaccat |
136 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
46345722 |
gttacaaactacgtggaaccaaaattcccctcacaatgctttccattttattctatataaacaaccttcttcaatgttatacctaccaaaccttaaccat |
46345623 |
T |
|
| Q |
137 |
ctaaatctaaggtgtagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacacttttgttgttgtaacattaagaa |
236 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46345622 |
ctaaatctaaggtgcagtgaagttaaagagttctaagtgttttgttttacaaagctatcctatcctcaaaaacacacttt-gttgttgtaacattaagaa |
46345524 |
T |
|
| Q |
237 |
cttgttatcaatggctgtttcatcttatcaatctatcatgtctagccccattaccagcaccatttctagcaggcctagagttaaccaatttaacaacatc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46345523 |
cttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattactagcatcatttctagcaggcctagagttaaccaatttaacaacatc |
46345424 |
T |
|
| Q |
337 |
cct |
339 |
Q |
| |
|
||| |
|
|
| T |
46345423 |
cct |
46345421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 222 - 339
Target Start/End: Original strand, 46470680 - 46470797
Alignment:
| Q |
222 |
ttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagccccattaccagcaccatttctagcaggcctagagttaac |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
46470680 |
ttgtaacattaagaacttgttatcaatggctgtttcatcttatcaatctatcatgtctagctccattacaagcagcatttctagcaggcctagagttaac |
46470779 |
T |
|
| Q |
322 |
caatttaacaacatccct |
339 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
46470780 |
caatttaacaacatccct |
46470797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 46465293 - 46465417
Alignment:
| Q |
16 |
aaccaataaactttaagacccagttacacactacgtggaaccataatatccctcacaatgctttccatttcattctatataaacaaccttcttcaatgct |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
46465293 |
aaccaattaactttaagacccagttacacactacgtggaaccataatatccctcacaatgctttccattttattctatataaacaaccaccttaaatgct |
46465392 |
T |
|
| Q |
116 |
atacctaccaaccttaaccatctaa |
140 |
Q |
| |
|
| || || ||||| ||| ||||||| |
|
|
| T |
46465393 |
acacatatcaaccataatcatctaa |
46465417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 46461900 - 46461993
Alignment:
| Q |
39 |
ttacacactacgtggaaccataatatccctcacaatgctttccatttcattctatataaacaaccttcttcaatgctatacctaccaaccttaa |
132 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
46461900 |
ttacacactacatggaagcataatgcccctcacaatgctttccattttattctatataaacaaccttcttcaatgatatacctaccaaacttaa |
46461993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 46470538 - 46470608
Alignment:
| Q |
71 |
caatgctttccatttca-ttctatataaacaaccttcttcaatgctatacctaccaaccttaaccatctaa |
140 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46470538 |
caatgctttccattttaattctctataaacaaccttcttcaatgctatacataccaaccttaaccatctaa |
46470608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 46462097 - 46462177
Alignment:
| Q |
241 |
ttatcaatggctgtttcatcttatcaatctatcatgtctagccccattaccagcaccatttctagcaggcctagagttaaccaa |
324 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||| | || || |||||||||||||||| |||||||||||||| |
|
|
| T |
46462097 |
ttatcaatggctgtatcatcttaccaatctatcatgtcaagctcaatgac---caccatttctagcaggtctagagttaaccaa |
46462177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 46465514 - 46465567
Alignment:
| Q |
242 |
tatcaatggctgtttcatcttatcaatctatcatgtctagccccattaccagca |
295 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
46465514 |
tatcaatggctgtatcatcttatcaatctatcatgtcaagctccatgaccagca |
46465567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University