View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4183_high_12 (Length: 308)
Name: NF4183_high_12
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 3092500 - 3092201
Alignment:
| Q |
1 |
aaccattgaagttgttgtgaaaatgtcaaattttgatgcactactgctataatggtgacaggtttacttgaaactgcaaacatttgcaaattcaagaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3092500 |
aaccattgaagttgttgtgaaaatgtcaaattttgatgcactactgctataatggtgacaggtttacttgaaactgcaaacatttgcaaattcaagaaca |
3092401 |
T |
|
| Q |
101 |
ggaagcagtccaaagaattcctcggcattcttaaaggcagccactactacattgcttcacacaataagtgaatctgagaagtcatcatatgttacacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3092400 |
ggaagcagtccaaagaattcctcggcattcttaaaggcagccactactacattgcttcacacaataagtgaatctgagaagtcatcatatgttacacata |
3092301 |
T |
|
| Q |
201 |
taaatcactatctttcacaagatgagttcctcaagaagtatcttcccattgatccttcaaccaatgagctcttcgaaattgcaaaagatggtgttcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3092300 |
taaatcactatctttcacaagatgagttcctcaagaagtatcttcccattgatccttcaaccaatgagctcttcgaaattgcaaaagatggtgttcttct |
3092201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 300
Target Start/End: Original strand, 18576931 - 18577186
Alignment:
| Q |
48 |
tataatggtgacaggtttacttgaaactgcaaacatttgcaaattcaagaacaggaagcagtc---caaagaattcctcggcattcttaaaggcagccac |
144 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||||| ||| ||||||||||||| | |||| || | || |||||| | |||| ||||| |
|
|
| T |
18576931 |
tataatgatgacaggtatacttgaaactgcaaacttttgcaagttctagaacaggaagcaataatgcaaaaaacacatcagcattcctcaaggttgccac |
18577030 |
T |
|
| Q |
145 |
tactacattgcttcacacaataagtgaatctgagaagtcatcatatgttacacatataaatcactatctttcacaagatgagttcctcaagaagtatctt |
244 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |||||| | || |||||||||||||||||| |||||||| || ||||||| ||||||||||| || ||| |
|
|
| T |
18577031 |
tacaacattgcttcacacaataagcgaatccgagaaggcgtcgtatgttacacatataaataactatcttgcagaagatgaattcctcaagaaatacctt |
18577130 |
T |
|
| Q |
245 |
cccattgatccttcaaccaatgagctcttcgaaattgcaaaagatggtgttcttct |
300 |
Q |
| |
|
|| |||||||||||||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
18577131 |
cctcttgatccttcaaccaacgatctcttcgaaatcgcaaaagacggtgttcttct |
18577186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University