View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_high_16 (Length: 268)
Name: NF4183_high_16
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 2615692 - 2615449
Alignment:
| Q |
18 |
ttcactgtttaaaaa--tatatgagtttacacatacaattttttacacatgaaattggattgttcctcaaatgaccagctcttggaatcaaacatgaatt |
115 |
Q |
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| T |
2615692 |
ttcactgtttaaaaaaatatatgagtttacacatacaattttttacacatgaaattggattgttcctcaaatgaccagctcttggaatcaaacatgaatt |
2615593 |
T |
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| Q |
116 |
ctttctccacgagagccacattaccaactcttctaacatcatattattaagtcattaggtaaaagaaatcgaaagatattataacatatttacttaatta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2615592 |
ctttctccacgagagccacattaccaactcttctaacatcatattattaagtcattaggtaaaagaaatcgaaagatattagaacatatttacttaatta |
2615493 |
T |
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| Q |
216 |
catgtttactgaatataaagataaaataagtgaccaagtataat |
259 |
Q |
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| T |
2615492 |
catgtttactgaatataaagataaaataagtgactaagtataat |
2615449 |
T |
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