View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4183_high_2 (Length: 541)
Name: NF4183_high_2
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 1407723 - 1407201
Alignment:
| Q |
17 |
acattttttgcatcttatatttaattcacacttgattaaattttccttaatagagtctcctgagaataataactaagttggtaaggataatgtattttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1407723 |
acattttttgcatcttatatttaattcacacttgattaaattttccttaatagagtctcctgagaataataactaagttggtaaggataatgtattctaa |
1407624 |
T |
|
| Q |
117 |
tatgtagggtcggagttcgaactctgaacatctcacttatttatcttaaaagggtgaatttgttaatcagattacttnnnnnnnnnnnnnnnnn---tcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1407623 |
tatgtagggtcggagttcgaactctgaacatctcacttatttatcttaaaagggtgaatttgttaatcagattacttaaaaaaaaataaaaataaaatcc |
1407524 |
T |
|
| Q |
214 |
ccgatagataactctacatcaactttcactatctttctgtatctttctatgtctccctgtttccgttttatcatggatgagtttaatagcactctttatc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1407523 |
tcgatagataactctacatcaactttcactatctttctgtatctttctatgtctccctgtttccgttttatcatggatgagtttaatagcactctttatc |
1407424 |
T |
|
| Q |
314 |
cccaaggaatgtatgaatgatatgaagaatattacgtgtatgatgtaattggtcggtccaagcatatctatttatttttcttcttctttttcctttagaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1407423 |
cccaaggaatgtatgaatgatatgaagaatattacgtgtatgatgtaattggtcggtccaagcatatctatttatttttcttcttctttttcctttagaa |
1407324 |
T |
|
| Q |
414 |
ttttgattgtataaaaggtggtatattcaatctacttttacacttttggttattgtcaatatatacggtgacatgataaggtggaattattattatcatg |
513 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1407323 |
ttttgattgtataaatggtggtatattcaatctacttttacacttttggttattgtcaatatatacggtgacatgataaggtggaattattattatcatg |
1407224 |
T |
|
| Q |
514 |
ctttaccaagggtctgtgctgct |
536 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
1407223 |
ctttaccaagggtatgtgctgct |
1407201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 42831976 - 42831905
Alignment:
| Q |
94 |
ttggtaaggataatgtattttaatatgtag-ggtcggagttcgaactctgaacatctcacttatttatcttaa |
165 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| ||||||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
42831976 |
ttggtagggataatgcatatta-tatgtagaggtcggagttcgaaccccgaacatctcacttatttattttaa |
42831905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University