View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_high_20 (Length: 237)
Name: NF4183_high_20
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34692356 - 34692592
Alignment:
| Q |
1 |
aaaatcctagttgaggctgtgaactctagttgtgctcatatcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34692356 |
aaaatcctagttgaggctgtgaactctagttgtgctcatatcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgact |
34692455 |
T |
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| Q |
101 |
tttgagtatcttttattcggaggcaaactaatagggtcgctcatagtagagatagagcatccctatcacacactagccccatcnnnnnnnattgtacctt |
200 |
Q |
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| T |
34692456 |
ttagagtatcgtttattcggagacaaattaatagggtcgctcatagtagaggtagagcatccctatcacacagtagccccatctttttttattgtacctt |
34692555 |
T |
|
| Q |
201 |
actctttgtttatgaaggaaatacattaaccttgcct |
237 |
Q |
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| T |
34692556 |
actctttgtttatgaaggaaatacattaaccttgcct |
34692592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 5185622 - 5185496
Alignment:
| Q |
41 |
tcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgacttttgagtatcttttattcggaggcaaactaatagggtcgc |
140 |
Q |
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| T |
5185622 |
tcaatgaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcgtatattaggagacaagctaatagggttgc |
5185523 |
T |
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| Q |
141 |
tcatagtagagatagagcatccctatc |
167 |
Q |
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| T |
5185522 |
tcatagtatagctagagcttccttatc |
5185496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33703869 - 33703690
Alignment:
| Q |
1 |
aaaatcctagttgaggctgtgaactctagttgtgctcatatcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgact |
100 |
Q |
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|||||||||| || ||||||||||| || ||||||| ||| |||||||||||| || |||||| | ||||||||||||||||||||||||||||||| |
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| T |
33703869 |
aaaatcctagctgctgctgtgaactccagctgtgctcgtattaatgagtttggaatgatagtctcttagtgtagagaccttttgattttaaataccgact |
33703770 |
T |
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| Q |
101 |
tttgagtatcttttattcggaggcaaactaatagggtcgctcatagtagagatagagcatccctatcacacactagcccc |
180 |
Q |
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| T |
33703769 |
ttagagtgttgtttattcggagacaagctaatagagtcgctcaaagtatagctagagcttctctatcacacactagcccc |
33703690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 7829982 - 7829876
Alignment:
| Q |
74 |
gagaccttttgattttaaataccgacttttgagtatcttttattcggaggcaaactaatagggtcgctcatagtagagatagagcatccctatcacacac |
173 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||| | |||||| |||||| || |||||||||| || |||||| |||||||||||||| |
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| T |
7829982 |
gagaccttttgattttaaataccgattttagagtgtcttttatttgaaggcaagctaatacagttgctcatagtatagttagagcttccctatcacacac |
7829883 |
T |
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| Q |
174 |
tagcccc |
180 |
Q |
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||||||| |
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| T |
7829882 |
tagcccc |
7829876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 28796069 - 28796145
Alignment:
| Q |
16 |
gctgtgaactctagttgtgctcatatcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaat |
93 |
Q |
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| T |
28796069 |
gctgtgaactctacctgtgctcatattaatgagtttggagacatagtctctcagtgtaga-aacttttgattttaaat |
28796145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 180
Target Start/End: Complemental strand, 10813287 - 10813148
Alignment:
| Q |
41 |
tcaatgagtttggagacatcgtctctcaatgtagagaccttttgattttaaataccgacttttgagtatcttttattcggaggcaaactaatagggtcgc |
140 |
Q |
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||||||| |||||||||| | ||||||||||||| || ||| || ||||||||||||| ||| || | ||||||||||||| |||||||||| || |
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| T |
10813287 |
tcaatgaagttggagacattatttctcaatgtagaggtctcttgtttacaaataccgactttaaagtgtcatatattcggaggcaagctaatagggttgc |
10813188 |
T |
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| Q |
141 |
tcatagtagagatagagcatccctatcacacactagcccc |
180 |
Q |
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|||||||| || |||||| ||| |||| || |||||||| |
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| T |
10813187 |
tcatagtatagctagagcttccttatctcatcctagcccc |
10813148 |
T |
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