View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4183_high_3 (Length: 519)
Name: NF4183_high_3
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 4695647 - 4696018
Alignment:
| Q |
10 |
agtagcataggaaaataaatattaaagtatatggtttgaggatttagaagagaaagggaggtgatgacttacccttttataataaatatattatataacc |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4695647 |
agtatcataggaaaataaatattaaagtatatggtttgacgatttagaagagaaagggaggtgatgacttacccttttataata----tattatataacc |
4695742 |
T |
|
| Q |
110 |
atgtacaataaaataaatctataatgaagtgtaatggaaaagcggaacatgttcgtcttgatgctactctataaaatatatctatattagggttgtacaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4695743 |
atgtacaataaaataaatctataatgaagtgtaatggaaaagcggaacatgtccgtcttgatgctactctataaa-tatatctatattaggattgtacaa |
4695841 |
T |
|
| Q |
210 |
gggacaaactagccatgttgtatatgacccgaacctggttctaacactagctcaagacaaattttagacatgaaatcgaccctaaactctgtcaaaattg |
309 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4695842 |
gggacgaactagctatgttgtatatgacccgaacctggttctaacactaactcaagacaaattttcgacatgaaatcgaccctaaactctgtcaaaattg |
4695941 |
T |
|
| Q |
310 |
atgaggtccgtgtctgataaggatgagaaaataccaagacaaggtcaggttggtccaagccaaaatcaccggtacat |
386 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
4695942 |
atgaggtacgtgtcagataaggatgagacaataccaagacaagatcaggttggtccaagtcaaaatcacctgtacat |
4696018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University