View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_high_5 (Length: 476)
Name: NF4183_high_5
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 459
Target Start/End: Original strand, 32596754 - 32597192
Alignment:
| Q |
20 |
cgttgttatattttgagttcgacttgaagaatacattgcaaaatatgtcaagtctactcaataccaagttggataatgtttgctggaaaccccattctac |
119 |
Q |
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| T |
32596754 |
cgttgttatattttgagttcgacttgaagaatacattgcaaaatatgtcatgtctactcaataccaagttggataatgtttgctggaaaccccattctac |
32596853 |
T |
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| Q |
120 |
ggtctcaccctctctccttgtttagttgcttgaaagggtgtaaatgtagtctcagtctgtggtataaaatagtgtataaggtgtccaccctctctcctag |
219 |
Q |
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| T |
32596854 |
ggtctcaccctgtctccttgtttagttgcttgaa-gggtgtaaatgtagtctcagtctgtggtataaaatagtgtatatggtgtccaccctctctcctag |
32596952 |
T |
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| Q |
220 |
ttaaatggagagattacaatttgtacaagtgctcaatgtatacataagatgtatcactctaaacttcctttgttggcattaagggtaaagattgtaggaa |
319 |
Q |
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| T |
32596953 |
ttacatggagaaattacaatttgtacaagtgctcaatgtatacataagatgtatcactctaaatttcctttgttggcattaagggtaaagattgtaggaa |
32597052 |
T |
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| Q |
320 |
agaaataaagatattagctaatgtgtctttatagctataattgattgttggtttagttgacttcttgacttttataacgtaagcttctatgtagtggtga |
419 |
Q |
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| T |
32597053 |
agaaataaagatattagttaatgtgtctttatagctataattgattgttggtttagttgacttcttgacttttataacgtaagcttctatgtagtggtga |
32597152 |
T |
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| Q |
420 |
caatattctatccattctatagtgaaatcattgctatgtg |
459 |
Q |
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| T |
32597153 |
caatattctatccattctatagtgaaatcattgctatgtg |
32597192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 32578502 - 32578544
Alignment:
| Q |
345 |
tctttatagctataattgattgttggtttagttgacttcttga |
387 |
Q |
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| T |
32578502 |
tcttcatagctataattgattgttggtttagttgacttcttga |
32578544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 32667147 - 32667189
Alignment:
| Q |
48 |
gaatacattgcaaaatatgtcaagtctactcaataccaagttg |
90 |
Q |
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| T |
32667147 |
gaatacattacaaaatatgtcaagtctacacaatacaaagttg |
32667189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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