View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_high_9 (Length: 404)
Name: NF4183_high_9
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 28781250 - 28781059
Alignment:
| Q |
18 |
ccttcaaggttagaaatctcattatcgtttatgattttacttttaaaccagtgttgtcaaatagcagttgtaacgctatagcatagtggaattttaacaa |
117 |
Q |
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| T |
28781250 |
ccttcaaggttagaaatctcattatcgtttatgattttacttttaaaccagtgttgtcaaatagcagttgtaacgctatagcatagtggaattttaacaa |
28781151 |
T |
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| Q |
118 |
atcgctgttgttctgcaatatttgatttagtacagagtgttgtcacatcatggctaaagaaacgcataccattgtaacatagtggaatttga |
209 |
Q |
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| T |
28781150 |
atcgctgttgttctgcaatatttgatttagtacagagtgttgtcacatcgtcgctaaagaaacgcataccattgtaacatagtggaatttga |
28781059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 28781061 - 28780903
Alignment:
| Q |
235 |
tgattgacaacactgtctcgaagttttgttttccttggaaacatgatgttggaaaaatctcaattgtgaagtttatagctgttgtgcattttgagctctg |
334 |
Q |
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| T |
28781061 |
tgattgacaacactgtctcaaagttttgttttccttggaaacatgatgttggaaaaatctcaattgtgaagtttatagctgttgtgcattttgagctctg |
28780962 |
T |
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| Q |
335 |
agaatgttgtgcttgatttgacca-aaacttcaatatttgtgttatttattattgtgat |
392 |
Q |
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| T |
28780961 |
agaatgttgtgcttgatttgacaataaacttcaatatttgtgttatttattattgtgat |
28780903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 29460718 - 29460770
Alignment:
| Q |
197 |
tagtggaatttgaaccaactactatattatacaatctgtgattgacaacactgt |
250 |
Q |
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| T |
29460718 |
tagtggaatttgaacaaactgctatttca-acaatctgtgattgacaacactgt |
29460770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 41991171 - 41991240
Alignment:
| Q |
91 |
cgctatagcatagtggaattttaacaaatcgctgttgttctgcaatatttgatttagtacagagtgttgt |
160 |
Q |
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| T |
41991171 |
cgctatagcatagtggaatttaaacaaatcgatattattctgctatacgcaatttagtacaaagtgttgt |
41991240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 43283489 - 43283445
Alignment:
| Q |
93 |
ctatagcatagtggaattttaacaaatcgctgttgttctgcaata |
137 |
Q |
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| T |
43283489 |
ctatagcatagcgtaatttgaacaaatcgctgttgttccgcaata |
43283445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 33277766 - 33277825
Alignment:
| Q |
92 |
gctatagcatagtggaattttaacaaatcgctgttgttctgcaatatttgatttagtaca |
151 |
Q |
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| T |
33277766 |
gctatagcatagtggaattttaacaaactgctattgttctgcaatacgtgttttagtaca |
33277825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 15707605 - 15707551
Alignment:
| Q |
195 |
catagtggaatttgaaccaactactatattatacaatctgtgattgacaacactg |
249 |
Q |
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| T |
15707605 |
catagcggaatttgaacaaactgctattttttacaatctgtgattgacaacactg |
15707551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 31838836 - 31838903
Alignment:
| Q |
92 |
gctatagcatagtggaattttaacaaatcgctgttgttctgcaatatttgatttagtacagagtgttgt |
160 |
Q |
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| T |
31838836 |
gctatagcatagtggagttttaacaaatttctattgttctgcaatatgt-atttagtacaaattgttgt |
31838903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 10275895 - 10275849
Alignment:
| Q |
92 |
gctatagcatagtggaattttaacaaatcgctgttgttctgcaatat |
138 |
Q |
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| T |
10275895 |
gctatagcatagtggaatttgaacaaatcattgttgttctgcgatat |
10275849 |
T |
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