View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_low_13 (Length: 311)
Name: NF4183_low_13
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 21426185 - 21425895
Alignment:
| Q |
7 |
catcatcattaaaatctatggataggggttgagtataagcagaagcagctttgaagaccattattttatgtgtgggagaggcagcaagttgaaaatgtga |
106 |
Q |
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| T |
21426185 |
catcatcgttaaaatctatggataggggttgagtataagcagaagcagctttgaagaccattattttatgtgtgggagaggcagcaagttgaaaatgtga |
21426086 |
T |
|
| Q |
107 |
agttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaaagtcttcaccggcaacctcagaaggatttccttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21426085 |
agttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaaagtcttcaccggcaacctcagaaggatttccttt |
21425986 |
T |
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| Q |
207 |
atcacttcttcaggcagatacacgctcatcttctccatcgccagtgagtttaacgaagggaatgagagttgtagttaatggtggtggttgc |
297 |
Q |
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| T |
21425985 |
atcacttcttcaggcagatacacgctcatcttctccatcgccggtgagtttaacgaagggaatgagagttgtagttaatggtggtggttgc |
21425895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 29856653 - 29856511
Alignment:
| Q |
87 |
gcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaaagtcttcaccggca |
186 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| | | |||| ||||||| || ||||||||||| |
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| T |
29856653 |
gcagcaagatgaaaatgtgaagttgaaaa-tgaggatgagagatcatagaaatccataacttacagacgcgcttgcaacgtagtacagacttcaccggca |
29856555 |
T |
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| Q |
187 |
acctcagaaggatttcctttatcacttcttcaggcagatacacg |
230 |
Q |
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| T |
29856554 |
acctcatcaggatttcggttatcaattctccagggagatgcacg |
29856511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 30120655 - 30120715
Alignment:
| Q |
72 |
ttatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatga |
132 |
Q |
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||||||||||| ||||| ||||| ||||||||| |||||| ||||| ||||||||||||| |
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| T |
30120655 |
ttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagagatga |
30120715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 41311468 - 41311638
Alignment:
| Q |
73 |
tatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaa |
172 |
Q |
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||||||||| || |||||||||||||||||||||| || |||| |||| |||||| | ||| |||||| |||||||||| | ||||| ||||||| |
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| T |
41311468 |
tatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaatagggatcagagattagagagagccatgacttacagacgc--ctgcaacgtagtac |
41311565 |
T |
|
| Q |
173 |
agtcttcaccggcaacctcagaaggatttcctttatcacttcttcaggcagatacacgctcatcttctccatc |
245 |
Q |
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|| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
41311566 |
agacttcaccggcaacctcagcaggatttcggttatcacttcttcaggcagatgcactctcttcttcgccatc |
41311638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 43165421 - 43165520
Alignment:
| Q |
140 |
ccataacttacagacacacctgcagcgtagtaaagtcttcaccggcaacctcagaaggatttcctttatcacttcttcaggcagatacacgctcatcttc |
239 |
Q |
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|||||||||||| |||||||||||||| |||| ||||| |||||||||| ||| ||||| ||| |||| |||||| | ||||||| ||| ||| ||||| |
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| T |
43165421 |
ccataacttacaaacacacctgcagcgaagtagagtctacaccggcaacttcaacaggatctccgttattacttctaccggcagatgcactctcttcttc |
43165520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 7904745 - 7904681
Alignment:
| Q |
93 |
agttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacaca |
157 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| |||||| | ||||| |||||||||||| ||||| |
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| T |
7904745 |
agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacaca |
7904681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 7765335 - 7765276
Alignment:
| Q |
92 |
aagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttaca |
151 |
Q |
| |
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|||||| ||||||||| ||| ||| ||||||| |||||| ||||||| |||||||||||| |
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| T |
7765335 |
aagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttaca |
7765276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 45372424 - 45372519
Alignment:
| Q |
95 |
ttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacacacctgcagcgtagtaaagtcttcaccggcaacct |
190 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| ||||||| ||| ||||||| ||||| || | |||| | || ||||||||||||||| |
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| T |
45372424 |
ttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacct |
45372519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 7774194 - 7774258
Alignment:
| Q |
93 |
agttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataacttacagacaca |
157 |
Q |
| |
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||||||||||||||| ||| |||||| |||| |||||| | ||||| ||||| |||||| ||||| |
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|
| T |
7774194 |
agttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacaca |
7774258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 29260981 - 29260910
Alignment:
| Q |
72 |
ttatgtgtgggagaggcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccat |
143 |
Q |
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||||||||||| ||||| ||||| ||||||||| |||||| ||||| |||||||| |||| ||| |||||| |
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| T |
29260981 |
ttatgtgtgggtgaggcggcaagatgaaaatgtaaagttgcaaaattgggatgagaaatgagagacagccat |
29260910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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