View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_low_16 (Length: 290)
Name: NF4183_low_16
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 5533356 - 5533215
Alignment:
| Q |
133 |
tcttcatcttaggatatttactaatattatttgattcggtatgaggtaaagttggaatggg-ctaactatttatagagaagtgggaagggctgaaaatgt |
231 |
Q |
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| T |
5533356 |
tcttcatcttaggatatttacaaatattatttgattcggtatgaggtaaagttggaatggggctaactatttatagagaagtggaaagggctgaaaatgt |
5533257 |
T |
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| Q |
232 |
aaaagttgtaattatgtcaccgtattttgtattgcttatttc |
273 |
Q |
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| T |
5533256 |
aaaagttgtaattatgtcatcttattttgtattgcttatttc |
5533215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 5533502 - 5533445
Alignment:
| Q |
11 |
atcatcagatgtgatgttttccacaggtttgtagggatagcctgaattggtgtttggg |
68 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5533502 |
atcatctgatgtgatgttttccacaggtttgcagggatagcctgaattggtgtttggg |
5533445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 5550204 - 5550095
Alignment:
| Q |
133 |
tcttcatcttaggatatttactaatattatttgattcggtatgaggtaaagttggaatgggctaactatttatagagaagtgggaagggctgaaaatgta |
232 |
Q |
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| T |
5550204 |
tcttcatcttaggatgcttactgatattatttgatttggtatgaggtaatgttagaattggctaactatttatagggaggcgggaaggtgtgaaaacata |
5550105 |
T |
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| Q |
233 |
aaagttgtaa |
242 |
Q |
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| T |
5550104 |
aaagatgtaa |
5550095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 5558763 - 5558654
Alignment:
| Q |
133 |
tcttcatcttaggatatttactaatattatttgattcggtatgaggtaaagttggaatgggctaactatttatagagaagtgggaagggctgaaaatgta |
232 |
Q |
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||||||||||||||| ||||| ||||||||||||| || ||||||||| ||| |||| |||||||||||||||| || | ||||||| |||||| || |
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| T |
5558763 |
tcttcatcttaggatgcttactgatattatttgatttggcatgaggtaatgttagaattggctaactatttatagggaggcgggaaggtgtgaaaacata |
5558664 |
T |
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| Q |
233 |
aaagttgtaa |
242 |
Q |
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|||| ||||| |
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| T |
5558663 |
aaagatgtaa |
5558654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 5568193 - 5568119
Alignment:
| Q |
133 |
tcttcatcttaggatatttactaatattatttgattcggtatgaggtaaagttggaatgggctaactatttatag |
207 |
Q |
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||||||||||| ||| ||| |||||||||||||| | |||||||||| |||| ||| |||||||||||||||| |
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| T |
5568193 |
tcttcatcttaagatgcttaaaaatattatttgatttgctatgaggtaatgttgtaattggctaactatttatag |
5568119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 5568332 - 5568283
Alignment:
| Q |
18 |
gatgtgatgttttccacaggtttgtagggatagcctgaattggtgtttgg |
67 |
Q |
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| T |
5568332 |
gatgtgatgctcgccacaggtttgcaaggatagcctgaattggtgtttgg |
5568283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 5550347 - 5550291
Alignment:
| Q |
11 |
atcatcagatgtgatgttttccacaggtttgtagggatagcctgaattggtgtttgg |
67 |
Q |
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|||||| |||||||| || ||||||||||| | ||||||||||||| ||||||||| |
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| T |
5550347 |
atcatctgatgtgattttcgccacaggtttgcaaggatagcctgaataggtgtttgg |
5550291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 5558886 - 5558850
Alignment:
| Q |
31 |
ccacaggtttgtagggatagcctgaattggtgtttgg |
67 |
Q |
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| T |
5558886 |
ccacaggtttgcaaggatagcctgaattggtgtttgg |
5558850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 15337881 - 15337932
Alignment:
| Q |
158 |
attatttgattcggtatgaggtaaagttggaatgggctaactatttatagag |
209 |
Q |
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|||||| |||| |||||||||||| ||| ||| ||||||||||||||||||| |
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| T |
15337881 |
attattggatttggtatgaggtaatgttagaacgggctaactatttatagag |
15337932 |
T |
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