View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4183_low_4 (Length: 477)

Name: NF4183_low_4
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4183_low_4
NF4183_low_4
[»] chr6 (7 HSPs)
chr6 (17-173)||(32536942-32537098)
chr6 (239-466)||(32536648-32536876)
chr6 (349-467)||(15959084-15959202)
chr6 (377-461)||(14373289-14373373)
chr6 (422-461)||(11462171-11462210)
chr6 (377-461)||(20883331-20883415)
chr6 (377-409)||(21168035-21168067)
[»] chr3 (6 HSPs)
chr3 (349-467)||(26771259-26771377)
chr3 (366-415)||(17098163-17098212)
chr3 (422-461)||(19890436-19890475)
chr3 (377-456)||(48570337-48570416)
chr3 (377-446)||(40930826-40930895)
chr3 (377-409)||(34333113-34333145)
[»] chr2 (2 HSPs)
chr2 (349-467)||(17765232-17765350)
chr2 (366-461)||(15917411-15917507)
[»] chr8 (3 HSPs)
chr8 (358-453)||(34137242-34137337)
chr8 (383-444)||(41665673-41665734)
chr8 (377-409)||(32266374-32266406)
[»] chr4 (5 HSPs)
chr4 (377-461)||(2822335-2822419)
chr4 (364-450)||(11587483-11587569)
chr4 (377-461)||(20002476-20002560)
chr4 (379-461)||(23162932-23163014)
chr4 (377-409)||(15740031-15740063)
[»] chr5 (6 HSPs)
chr5 (377-444)||(19255421-19255488)
chr5 (377-461)||(18359388-18359472)
chr5 (380-458)||(26019287-26019365)
chr5 (377-409)||(8227836-8227868)
chr5 (377-409)||(23238193-23238225)
chr5 (433-461)||(27795241-27795269)
[»] chr7 (3 HSPs)
chr7 (422-461)||(25619217-25619256)
chr7 (377-412)||(37919351-37919386)
chr7 (377-409)||(11277550-11277582)
[»] chr1 (4 HSPs)
chr1 (377-444)||(6259592-6259659)
chr1 (371-461)||(47623367-47623456)
chr1 (384-412)||(4842211-4842239)
chr1 (377-461)||(51994026-51994110)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 3e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 32537098 - 32536942
Alignment:
Q  17 aaatttgaatagtttgattcgtgtgcccagaagtacatcattcaccaataatttttgttttaggggaatcattcatcaatcttgtttatttccatggaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32537098 aaatttgaatagtttgattcgtgtgcccagaagtacatcattcaccaataatttttgttttaggggaatcattcatcaatcttgtttatttccatggaat 32536999  T
Q  117 ataattttaatctaaatataattcgtctaaatattttatggatttagatcatcgaca 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32536998 ataattttaatctaaatataattcgtctaaatattttatggatttagatcatcgaca 32536942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 239 - 466
Target Start/End: Complemental strand, 32536876 - 32536648
Alignment:
Q  239 aaatgaggggttgaagaacgaaaataatttacatgcatagatggtgtaaannnnnnnnnnn-acacatgtactatcaaatcacaatgcatagattggtga 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  32536876 aaatgaggggttgaagaacgaaaataatttacatgcatagatggtgtaatttttttttttttacacatgtactatcaaatcacaatgcatagattggtga 32536777  T
Q  338 gggcttggcttggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccattt 437  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||    
T  32536776 gggcttggcttggggttgatcctcaacatatttcggattattttttgcaatttattcattacgcaggttgtttaaaattgcaaagatctttttttcattt 32536677  T
Q  438 gatttggcttcagtgtgtttgggtcctat 466  Q
    |||||| ||||||||||||||||||||||    
T  32536676 gatttgacttcagtgtgtttgggtcctat 32536648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 349 - 467
Target Start/End: Original strand, 15959084 - 15959202
Alignment:
Q  349 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 448  Q
    |||||||||||||| |||||||| ||| |||||| ||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||     
T  15959084 ggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgcaggttgcttgaaatcgcgaagatcttttttccatttgatttggctta 15959183  T
Q  449 agtgtgtttgggtcctatg 467  Q
    |||||  ||||| ||||||    
T  15959184 agtgtaattgggacctatg 15959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 14373289 - 14373373
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||||||||||||||||| || || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
T  14373289 attttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcattcttccatttgatttggcttcagtgtttttgggt 14373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 461
Target Start/End: Complemental strand, 11462210 - 11462171
Alignment:
Q  422 gatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11462210 gatctttatttcatttgatttggcttcagtgtgtttgggt 11462171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 20883331 - 20883415
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||| | || |||||| | |||||||   |  ||||||| || ||||||||||||||||||||||| |||||    
T  20883331 attttgtgcaatttattgaatatgcaggtggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggt 20883415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 21168067 - 21168035
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  21168067 attttttgcaatttattaattacgcaggttgtt 21168035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 349 - 467
Target Start/End: Original strand, 26771259 - 26771377
Alignment:
Q  349 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 448  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||| | |||||| |||||||||||||||||||||||    
T  26771259 ggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgcaggttgcttaaaatcgcgaagattttttttccatttgatttggcttc 26771358  T
Q  449 agtgtgtttgggtcctatg 467  Q
    |||||||||||||||||||    
T  26771359 agtgtgtttgggtcctatg 26771377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 17098163 - 17098212
Alignment:
Q  366 tatttcggactattttttgcaatttattcattacgcaggttgtttgaaat 415  Q
    |||||| ||| |||| |||||||||||||||||||||||| |||||||||    
T  17098163 tatttcagaccatttcttgcaatttattcattacgcaggtggtttgaaat 17098212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 461
Target Start/End: Complemental strand, 19890475 - 19890436
Alignment:
Q  422 gatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  19890475 gatctttatttcatttgatttggcttcagtgtgtttgggt 19890436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 456
Target Start/End: Original strand, 48570337 - 48570416
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtt 456  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||| | ||||| |||||||||||||||||||||    
T  48570337 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtt 48570416  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 40930826 - 40930895
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggct 446  Q
    ||||||||||||||||| |||| |||||||||| || |  |||| | ||||| || ||||||||||||||    
T  40930826 attttttgcaatttattaattatgcaggttgttcgagagggtgacgttctttctttcatttgatttggct 40930895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 34333113 - 34333145
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  34333113 attttttgcaatttattaattacgcaggttgtt 34333145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 349 - 467
Target Start/End: Original strand, 17765232 - 17765350
Alignment:
Q  349 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 448  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||   ||||||||||||| ||||||||||||||||    
T  17765232 ggggttgatcctcaacatatttcagaccattttttgcaacttattcattacgcaggttgcttgaaatcacgaagatctttttttcatttgatttggcttc 17765331  T
Q  449 agtgtgtttgggtcctatg 467  Q
    |||||||||||||| ||||    
T  17765332 agtgtgtttgggtcttatg 17765350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 15917507 - 15917411
Alignment:
Q  366 tatttcggactattttttgcaatttattcattacgcaggttgtttg-aaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    |||||| ||| |||||||||||||||||||||| |||||| | | | |||| | || ||||||||||||| ||| |||| ||||| |||||||||||    
T  15917507 tatttcagaccattttttgcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggt 15917411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 453
Target Start/End: Original strand, 34137242 - 34137337
Alignment:
Q  358 cctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgt 453  Q
    ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||   | |||| |||  |||||||||||||||||||||||    
T  34137242 cctcagcatattttggaccattttttgcaatttattcattatgcaggttgtttgaaatcccgtagatatttgctccatttgatttggcttcagtgt 34137337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 41665673 - 41665734
Alignment:
Q  383 tgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 444  Q
    ||||||||||| |||||||||||||||||| |  | || ||||||| ||||| |||||||||    
T  41665673 tgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttgg 41665734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 32266406 - 32266374
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  32266406 attttttgcaatttattaattacgcaggttgtt 32266374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 2822335 - 2822419
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||||| ||||| ||||||||||||||||||||||||||    
T  2822335 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctttcttccacttgatttggcttcagtgtgtttgggt 2822419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 11587483 - 11587569
Alignment:
Q  364 catatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcag 450  Q
    |||||||||||| ||||||||||||| |||||||| |||||| | | || ||   | |||||||| || ||||||||||||||||||    
T  11587483 catatttcggaccattttttgcaattcattcattatgcaggtagctcgacatcccgtagatctttatttcatttgatttggcttcag 11587569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 20002560 - 20002476
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||| | || | |||| | ||||||||  |  ||||||| || |||||||||||||||||||||||||||||    
T  20002560 attttgtgcaatttattgaatatgtaggtggcttgaaattccgtcgatctttatttcatttgatttggcttcagtgtgtttgggt 20002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 23162932 - 23163014
Alignment:
Q  379 tttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    |||||||||||||||||  | || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
T  23162932 tttttgcaatttattcagcatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttcagtgtatttgggt 23163014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 15740063 - 15740031
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  15740063 attttttgcaatttattaattacgcaggttgtt 15740031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 19255421 - 19255488
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 444  Q
    ||||||||||||||||| ||||||||||||||| || |||| || |||| |||||||| |||||||||    
T  19255421 attttttgcaatttattaattacgcaggttgttcgagattgcgacgatcatttttccacttgatttgg 19255488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 18359388 - 18359472
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||| | ||||||||| | |||||||   |  ||||||| || |||||||||||||||||||||||||||||    
T  18359388 attttgtgcaatttattaaatacgcaggtggcttgaaatctcgtcgatctttctttcatttgatttggcttcagtgtgtttgggt 18359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 26019287 - 26019365
Alignment:
Q  380 ttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttg 458  Q
    ||||||||||||| || |||||||||| | |||||  | |  ||||||| || ||||||||||||||||||||||||||    
T  26019287 ttttgcaatttatccaatacgcaggttttctgaaagcgcgtcgatctttatttcatttgatttggcttcagtgtgtttg 26019365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 8227868 - 8227836
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  8227868 attttttgcaatttattaattacgcaggttgtt 8227836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 23238225 - 23238193
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  23238225 attttttgcaatttattaattacgcaggttgtt 23238193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 461
Target Start/End: Complemental strand, 27795269 - 27795241
Alignment:
Q  433 catttgatttggcttcagtgtgtttgggt 461  Q
    |||||||||||||||||||||||||||||    
T  27795269 catttgatttggcttcagtgtgtttgggt 27795241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 461
Target Start/End: Complemental strand, 25619256 - 25619217
Alignment:
Q  422 gatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  25619256 gatctttatttcatttgatttggcttcagtgtgtttgggt 25619217  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 37919386 - 37919351
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttga 412  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37919386 attttttgcaatttattaattacgcaggttgtttga 37919351  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 11277550 - 11277582
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtt 409  Q
    ||||||||||||||||| |||||||||||||||    
T  11277550 attttttgcaatttattaattacgcaggttgtt 11277582  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 6259659 - 6259592
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 444  Q
    ||||||||||||||||| |||||| |||||||| || |  | || | |||||||||||||||||||||    
T  6259659 attttttgcaatttattaattacgtaggttgttcgagagggagacggtcttttttccatttgatttgg 6259592  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 461
Target Start/End: Original strand, 47623367 - 47623456
Alignment:
Q  371 cggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||||||||||| || || ||| |||||||||   |  |||| || ||||||||||||||||||| |||| |||||||    
T  47623367 cggaccattttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttc-gtgtatttgggt 47623456  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 412
Target Start/End: Complemental strand, 4842239 - 4842211
Alignment:
Q  384 gcaatttattcattacgcaggttgtttga 412  Q
    |||||||||||||||||||||||||||||    
T  4842239 gcaatttattcattacgcaggttgtttga 4842211  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 461
Target Start/End: Original strand, 51994026 - 51994110
Alignment:
Q  377 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 461  Q
    ||||| ||||||||||||| || || |||   ||||||| | |  ||||| | ||||| ||||||||||||||||||||||||||    
T  51994026 attttatgcaatttattcaatatgctggtgccttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtttgggt 51994110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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