View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_low_6 (Length: 464)
Name: NF4183_low_6
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 32829151 - 32828702
Alignment:
| Q |
1 |
cctcgtcgcgggttcggaagaaacataagaaattggatgcaatttgtgaggaagagtatactagaaatcacggtgagtgtaatgtgggtcatgatttgaa |
100 |
Q |
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| T |
32829151 |
cctcgtcacggattcggaagaaacataagaaattggatgcaatttgtgaggaagagtatactagaaatcacggtgagtgtaatgtgggtcatgatttgaa |
32829052 |
T |
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| Q |
101 |
ccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttgatgtctctcccacaccgaagaagaaacggttgaagttaggaaag |
200 |
Q |
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| T |
32829051 |
ccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttgatgtctctcccacaccgaagaagaaacggttgaagttaggaaag |
32828952 |
T |
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| Q |
201 |
gatgtagtgccgaagagtgtggagggtgataaaggtgtagggagagaaagtgggggttctggtggtgggaattggagtttgaggtcaagatcgaggggta |
300 |
Q |
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| T |
32828951 |
gatgtagttccgaagagtgtggagggtgataaaggtgtagggagagaaagtgggggttctggtggtgggaattggagtttgaggtcaagatcgaggggta |
32828852 |
T |
|
| Q |
301 |
agaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaagttgtttgatgaggtgttggaggttgataagaaagatgaattgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32828851 |
agaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaagttgtttgatgaggtgttggaggttgataagaaagatgaattgga |
32828752 |
T |
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| Q |
401 |
ggttgtggaggatgataggaaggaagaattggaggctgtggagggtgatg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32828751 |
ggttgtggaggatgataggaaggaagaattggaggctgtggagggtgatg |
32828702 |
T |
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