View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4183_low_7 (Length: 448)
Name: NF4183_low_7
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 50957902 - 50957468
Alignment:
| Q |
1 |
tgcatcagatagtcttttaacactcttgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatttatcagatttagt |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50957902 |
tgcatcagatagtcttttaacactcatgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatttatcagatttagt |
50957803 |
T |
|
| Q |
101 |
gtattgatcccccctctttcttccatactacactgctggcccaacacctcttcacttattatannnnnnnnnnnnncttcccctaatgttgtgccttgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50957802 |
gtattgatcccccctctttcttccatactacactgctggcccaacacctcttcacttattatattttttcctttttcttcccctaatgttgtgccttgat |
50957703 |
T |
|
| Q |
201 |
actcctcttctttctcaggaatcataccatcctttgccatcacagcctcgcatgacaaatcgagaaggtccctaattttgagatagtttgctgcctgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50957702 |
actcctcttctttctcaggaatcataccatcctttgccatcacagcctcgcatgacaaatcgagaaggtccctaattttgagatagtttgctgcctgaaa |
50957603 |
T |
|
| Q |
301 |
aaaccagacaagcagaattagacaatatgaaaaaccaga-aaaagcaaagaaatataacaacaatttgcaaattatacacaaacaataatacatccaact |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
50957602 |
aaaccagacaagcagaattagacaatatgaaaaaccagaaaaaagcaaagaaatataacaacaatttgcaaat--tacacaaacaataatacagccaact |
50957505 |
T |
|
| Q |
400 |
agatatagcatagcatagtctctaagagcttgcaaac |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
50957504 |
agatatagcatagcatagtctctaagagcttgcaaac |
50957468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 50948670 - 50948372
Alignment:
| Q |
3 |
catcagatagtcttttaacactcttgttttctaagtgtaattttaaggaccttggtacgttaccccaatttgaactacctccatttatcagatttagtgt |
102 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| || ||||||||| || || | | ||| |||| ||||| || ||||| ||||| ||||||| || |
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|
| T |
50948670 |
catcagagagtcttttaacactcatgttttctatgtataattttaaagaagttcttgcattatcccattttgagctccctccttttattagatttactgc |
50948571 |
T |
|
| Q |
103 |
attgatcccccctctttcttccatactacactgctggcccaacacctcttcacttattatannnnnnnnnnnnncttcccctaatgttgtgccttgatac |
202 |
Q |
| |
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|| |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
50948570 |
atggatccctcctctttcttccatactacactgctggcccaacagctcttcagaaattatattttttcctttttcttcccctattgttgtgccttgatac |
50948471 |
T |
|
| Q |
203 |
tcctcttctttctcaggaatcataccatcctttgccatcacagcctcgcatgacaaatcgagaaggtccctaattttgagatagtttgctgcctgaaaa |
301 |
Q |
| |
|
|||||||||| ||||||| || || ||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
50948470 |
tcctcttcttcctcaggagtcgtatcattctctgtcatcacagcctcgcatgacaaatcgagaagatccctaattttgagatagtgtgctgcctgaaaa |
50948372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 66 - 302
Target Start/End: Complemental strand, 15856072 - 15855836
Alignment:
| Q |
66 |
cccaatttgaactacctccatttatcagatttagtgtattgatcccccctctttcttccatactacactgctggcccaacacctcttcacttattatann |
165 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||||| | ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15856072 |
cccattttgagctccctccttttataagatttactctatggaaccctactctttcttccatactacactgctggcccaacacctcttcacttattatact |
15855973 |
T |
|
| Q |
166 |
nnnnnnnnnnncttcccctaatgttgtgccttgatactcctcttctttctc-aggaatcataccatcctttgccatcacagcctcgcatgacaaatcgag |
264 |
Q |
| |
|
|| ||| | |||| || ||||||||||||||||| ||| |||| ||||| ||| ||||||| |||||| ||||||||||||||| | |
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| T |
15855972 |
ttttcctttgtttttcccaactgtttggctttgatactcctcttctt-ctcgaggagtcatatcattctttgccgtcacagtctcgcatgacaaatcaac |
15855874 |
T |
|
| Q |
265 |
aaggtccctaattttgagatagtttgctgcctgaaaaa |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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|
| T |
15855873 |
aaggtccctaattttgagatagtgtgctgcctgaaaaa |
15855836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 50964498 - 50964429
Alignment:
| Q |
232 |
ctttgccatcacagcctcgcatgacaaatcgagaaggtccctaattttgagatagtttgctgcctgaaaa |
301 |
Q |
| |
|
||||||| |||||| ||| ||||||||| || ||| ||| |||||| |||||| ||||||||||||||| |
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|
| T |
50964498 |
ctttgccctcacagtctcagatgacaaattgataagatccgtaatttggagatactttgctgcctgaaaa |
50964429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 15856145 - 15856109
Alignment:
| Q |
11 |
agtcttttaacactcttgttttctaagtgtaatttta |
47 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |
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|
| T |
15856145 |
agtcttttaacactcatgttttctaactgtaatttta |
15856109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 302
Target Start/End: Complemental strand, 33631889 - 33631652
Alignment:
| Q |
62 |
ttaccccaatttgaactacctccatttatcagatttagtgtattgatcccccctctttcttccatactacactgctggcccaacacctcttcacttatta |
161 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
33631889 |
ttaccccattttgagctccctccttttatcagatttactgtatcgatccctcctcttttttccatactacactgctggaccaacac---ttcacttatta |
33631793 |
T |
|
| Q |
162 |
tannnnnnnnnnnnncttcccctaatgttgtgccttgatactcctcttctttctcaggaatcataccatcctttgccatcacagcctcgcatgacaaatc |
261 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||| ||||||| || || ||| || || |||||||||||||||||||||||| |
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|
| T |
33631792 |
tattttttcctttttctttccctattgttgtgccttgatactcctcttcttcctcaggagtcgtagcattctctgtcatcacagcctcgcatgacaaatc |
33631693 |
T |
|
| Q |
262 |
gagaaggtccctaattttgagatagtttgctgcctgaaaaa |
302 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
33631692 |
cagaagatccctaattttgagatagtgtgctgcctgaaaaa |
33631652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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