View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4183_low_8 (Length: 440)
Name: NF4183_low_8
Description: NF4183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4183_low_8 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 53869853 - 53870257
Alignment:
| Q |
21 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53869853 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
53869952 |
T |
|
| Q |
121 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
53869953 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
53870052 |
T |
|
| Q |
216 |
ctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatttgtttaaagnnnnnnnttgcaacccaattt |
315 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
53870053 |
ctgtaacttctatgggtcttctaagatg--ttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaattt |
53870150 |
T |
|
| Q |
316 |
ctaagtcaaccataaatttcgtatgaacttagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
415 |
Q |
| |
|
||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870151 |
ctacttcaaccataaatttcatatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
53870250 |
T |
|
| Q |
416 |
aacgaac |
422 |
Q |
| |
|
||||||| |
|
|
| T |
53870251 |
aacgaac |
53870257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 422
Target Start/End: Complemental strand, 625285 - 624882
Alignment:
| Q |
21 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
625285 |
taatggtggctcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagtatttctaatttcagttgca |
625186 |
T |
|
| Q |
121 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
625185 |
tacccatcatcttcta-acaaccactcattgtttctcttacatcccaactcctcagcaagtgtattttaccaaatacaattccatgttttctagttttag |
625087 |
T |
|
| Q |
216 |
ctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatttgtttaaagnnnnnnnttgcaacccaattt |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
625086 |
ttgtaacttgtatgggtcttctaagatg--ttttttaatttttattatgtcatagactaagatgaaaatttgtttaaaaaaaaaatttgcaacccaattt |
624989 |
T |
|
| Q |
316 |
ctaagtcaaccataaatttcgtatgaacttagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
415 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
624988 |
ctacttcaaccataaatttcgtatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
624889 |
T |
|
| Q |
416 |
aacgaac |
422 |
Q |
| |
|
||||||| |
|
|
| T |
624888 |
aacgaac |
624882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 5277628 - 5278032
Alignment:
| Q |
21 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5277628 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
5277727 |
T |
|
| Q |
121 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5277728 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaattcctcagcaagtgttttttaccaaatacaattccatgttttctagttttag |
5277827 |
T |
|
| Q |
216 |
ctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatttgtttaaagnnnnnnnttgcaacccaattt |
315 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5277828 |
ctgtaacttttatgggtcttctaagatg--ttttttaatttttattatgtcatagactaagatgaaaatttgtttaaagaaaaaatttgcaacccaattt |
5277925 |
T |
|
| Q |
316 |
ctaagtcaaccataaatttcgtatgaacttagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
415 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5277926 |
ctacttcaaccataaatttcttatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaatattaagattatagaaaggaatcagaatg |
5278025 |
T |
|
| Q |
416 |
aacgaac |
422 |
Q |
| |
|
||||||| |
|
|
| T |
5278026 |
aacgaac |
5278032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 40727171 - 40727567
Alignment:
| Q |
21 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatattcattttgaaattctttgtagcatttctaatttcagttgca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40727171 |
taatggtgggtcttttcttcacttgctcttactcaagtatctcttgaagatgtcaatatttattttgaaattctttgtagcatttctaatttcagttgca |
40727270 |
T |
|
| Q |
121 |
tacccatcatcttctagacaaccactcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaattcc-----ttctagttttag |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
40727271 |
tacccatcatcttctagacaacccctcattgtttctcttacatcccaactcctcagcaagtgttttttaccaaatacaatttcatattttctagttttag |
40727370 |
T |
|
| Q |
216 |
ctgtaacttgtatgggtcttctaagatgnnnnnnnnnnnnnnnattatgtcatagactaagatgaaaatttgtttaaagnnnnnnnttgcaacccaattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
40727371 |
ctgtaacttgtatgggtcttctaagatg--ttttttaatttttattatgtc--------agatgaaaatttgttcaaagaaaaaatttgcaacccaattt |
40727460 |
T |
|
| Q |
316 |
ctaagtcaaccataaatttcgtatgaacttagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataggaagatgatagaaaggaatcagaatg |
415 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
40727461 |
ctacttcaaccataaatttcgtatgaactcagttataaatgttatcaaagtgtaattgcaaaaacgtgaaataagaagataatagaaaggaatcagaatg |
40727560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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