View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4184_high_1_N (Length: 504)
Name: NF4184_high_1_N
Description: NF4184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4184_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 43607358 - 43606871
Alignment:
| Q |
1 |
ccaaagtctcatccgcatccaaacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatga |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607358 |
ccaaagtctcatccgcatcaaaacgtggcggctttgcaattgcatgatgatgatgtttaacgttaaccttctccagaaaccgtgaacgacggagatatga |
43607259 |
T |
|
| Q |
101 |
tgctacccaagcaaaggaagaaagcgaggtaataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607258 |
tgctacccaagcaaaggaagaaagcgaggtaataccgaaagcaccggatgtcaaaaatccggcgatggccaaaccaatgacgacagccgcagctaacaaa |
43607159 |
T |
|
| Q |
201 |
atggggctgaagaaaatgaacagaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607158 |
atggggctgaagaaaatgaacagaggggtggtgacagcgaggccgacaacggtggcagtgagtgtgagaccagcaagaatgagaagagttgctccaaaag |
43607059 |
T |
|
| Q |
301 |
gtacaagagtagcaagtactatgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttctg-tggtgctg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
43607058 |
gtacaagagtagcaagtactatgagttgtgaagtagaaggatgaaatcccttccttgttcttgtttgggtgaatgttatgggttggttctgctgctgctg |
43606959 |
T |
|
| Q |
400 |
ctcagctggtggtaaccgtagtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagttca |
489 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606958 |
ct--gctggtggtaaccgtagtagtcatccctgagagtttcagccattgaattaggaatatgtcttagactcttagtttagttcagttca |
43606871 |
T |
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