View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4184_high_6 (Length: 334)
Name: NF4184_high_6
Description: NF4184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4184_high_6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 31155206 - 31154884
Alignment:
| Q |
12 |
aaaggtgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcgatcaagtgttcaagcctcctcttcaatgatcaattgtcaacacg |
111 |
Q |
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| T |
31155206 |
aaagatgaagaaactcagtttgtgatttccgaagccagcaagaaaccaaataatcaatcaagtgttcaagcctcctcttcaatgatcaagtgtcaacacg |
31155107 |
T |
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| Q |
112 |
cggacaaagttgatcgatttttgcaagatcacaattgcaagaaaggtgagaagctttctgattcactaatacgtttgtcggggtgcatctctgtttttta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
31155106 |
cggacaaagttgatcgatttttgcaagatcacaattgcaagaaaggtgagaagctttctgattcactaatatgttcgtcggggagcatctctgtttttta |
31155007 |
T |
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| Q |
212 |
ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatg |
311 |
Q |
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| T |
31155006 |
ttacaacattcttacattgtttagattttgtatttgatcctggaggtgcgttttctttgattttggtgtatgttgttcccaaagttcttcgtcacacatg |
31154907 |
T |
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| Q |
312 |
ttcacgtttgtggtggatacctt |
334 |
Q |
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| T |
31154906 |
ttcacgtttgtggtggatacctt |
31154884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 28125862 - 28125763
Alignment:
| Q |
235 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
334 |
Q |
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| T |
28125862 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttcgcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
28125763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 44962371 - 44962414
Alignment:
| Q |
291 |
caaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
334 |
Q |
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| T |
44962371 |
caaagttcttcgccacacacgttcacgtttatggtggatacctt |
44962414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 5377661 - 5377760
Alignment:
| Q |
235 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
334 |
Q |
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| T |
5377661 |
gatttcgtattcgatcccggcggtgctttttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
5377760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 52519543 - 52519642
Alignment:
| Q |
235 |
gattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtggatacctt |
334 |
Q |
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| T |
52519543 |
gatttcgtattcgatcccggcggtgcattttccttgattatggtatgtgttgttctcaaagtacttcttcacacatgttcgcgtttatggtggatacctt |
52519642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 17450143 - 17450249
Alignment:
| Q |
228 |
ttgtttagattttgtatttgatcctggaggtgcgttttctttgattctggtgtatgttgttcccaaagttcttcgtcacacatgttcacgtttgtggtgg |
327 |
Q |
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||||| |||||||||||| ||||| || || | ||||||| |||| | ||| |||||| ||||||||||| |||||| |||||||||| |||||| |
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| T |
17450143 |
ttgttcagattttgtattcgatcccggcggaatgatttctttaattccgttgtgtgttgtcgtcaaagttcttcaccacacacgttcacgtttatggtgg |
17450242 |
T |
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| Q |
328 |
atacctt |
334 |
Q |
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||||||| |
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| T |
17450243 |
atacctt |
17450249 |
T |
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