View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_high_13 (Length: 300)
Name: NF4185_high_13
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 20577201 - 20576953
Alignment:
| Q |
7 |
acatcatcatcaacatcaaactgaaaatgttctgaagtcactgcctatactgaaaagaatccctttaaaatatgttaatattaacttcatcaaacttcat |
106 |
Q |
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| T |
20577201 |
acatcatcatcaacatcaaactgaaaatgttcttaagtcactgcctatactgaaaagaatccctttaaaatatgttaatattaacttcatcaaacttcat |
20577102 |
T |
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| Q |
107 |
tataatctatgactgactcagagttcacaaacttgtttagctgacaattggaattatatcttaagctaagagactgttgtaagtttagttacatgtacaa |
206 |
Q |
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| T |
20577101 |
tataatctatgactgactcagagttcacaaacttgtttagctgacaattggaattatatcttaagctaagagactgttgtaagtttagttacatgtacaa |
20577002 |
T |
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| Q |
207 |
ctactcgaaaccatagaagaaaacagaaataattgtagaacataccaaa |
255 |
Q |
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| T |
20577001 |
ctacttgaaaccatagaagaaaacagaaataattgtataacatatcaaa |
20576953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 20576940 - 20576906
Alignment:
| Q |
250 |
accaaactttaatgctcactttgtgtacatgaacc |
284 |
Q |
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| T |
20576940 |
accaaactttaatgctcactttgtgtacatgaacc |
20576906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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