View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_high_17 (Length: 210)
Name: NF4185_high_17
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 42642814 - 42642643
Alignment:
| Q |
18 |
gaacaaccaagttcaaaacaataaagaacaaagtaaacggacaaaaccatcaattatgatagttgaaaccaatttggggatattttgccttcaaacacca |
117 |
Q |
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| T |
42642814 |
gaacaaccaaattcaaaacaataaagaataaagtaaacagacaaaaccaccaattatgataatcgaaaccaatttagggatattttgccttcaaacacca |
42642715 |
T |
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| Q |
118 |
aaaagagatcagcttaattttgttcaaaagctgatgaatacggacttcttgatttctaaattttttgtcatt |
189 |
Q |
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| T |
42642714 |
aaaagagatcagcttaattttgttcaaaagctgatgaatacggacttcttgatttctaaaatttttgtcatt |
42642643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 36251780 - 36251908
Alignment:
| Q |
48 |
aagtaaacggacaaaaccatcaattatgatagttgaaaccaatttggggatattttgccttcaaacaccaaaaagagatcagcttaattttgttcaaaag |
147 |
Q |
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| T |
36251780 |
aagtaaatggacaaaaccaccaattatggtacccaaaaccaatatgggaatatttttccgtcagccacaaaaaagataacaacttaattttgttcaaaag |
36251879 |
T |
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| Q |
148 |
ctgatgaatacggacttcttgatttctaa |
176 |
Q |
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| T |
36251880 |
ctgatgaatacgcacttcttgatttctaa |
36251908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 38107168 - 38107228
Alignment:
| Q |
114 |
accaaaaagagatcagcttaattttgttcaaaagctgatgaatacggacttcttgatttct |
174 |
Q |
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| T |
38107168 |
accacaaagataacagcttaattttgtccaaaaactggtgaatacacacttcttgatttct |
38107228 |
T |
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