View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_high_18 (Length: 204)
Name: NF4185_high_18
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 33983187 - 33983370
Alignment:
| Q |
1 |
taaaaccaaaatggttctcattagaataaataaatatgataacatagcttttgagataaagcaagtgaagaaaatacttaagtaaactatcctgtagtta |
100 |
Q |
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| T |
33983187 |
taaaaccaaaatggttctcattagaataaataaatatgataacataacttttgagataaagcaagtgaagaaaatacttaagtaaactatcctgtagtta |
33983286 |
T |
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| Q |
101 |
att---ttatagtgcatttttaattttatagtgcatttacatatgagatgcctaaactgttctatcaagctattaaaacttgat |
181 |
Q |
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| T |
33983287 |
attttattatagtgcatttttaattttatagtgcatttacataagagatgcctaaactgttctatcaaacaattaaaacttgat |
33983370 |
T |
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Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1273783 - 1273603
Alignment:
| Q |
1 |
taaaaccaaaatggttctcattagaataaataaatatgataacatagcttttgagataaagcaagtgaagaaaatacttaagtaaactatcctgtagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1273783 |
taaaaccaaaatggttctcattagaataaataaatatgataacataacttttgagataaagcaagtgaagaaaatacttaagtaaactatcctgtagtta |
1273684 |
T |
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| Q |
101 |
attttatagtgcatttttaattttatagtgcatttacatatgagatgcctaaactgttctatcaagctattaaaacttgat |
181 |
Q |
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|||||||||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
1273683 |
attttatagtgcattttttattttatagcgtatttatatatgagaagcctaaactgttctaacaagcaattaaaacttgat |
1273603 |
T |
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