View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_high_3 (Length: 619)

Name: NF4185_high_3
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_high_3
NF4185_high_3
[»] chr2 (1 HSPs)
chr2 (1-610)||(4421993-4422601)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 610
Target Start/End: Complemental strand, 4422601 - 4421993
Alignment:
Q  1 ctatgaaagttgttagtattatcctatccctcaataaataataaagcatactcattcagatgagcaccaccatttggatttctttcaccaatgccacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4422601 ctatgaaagttgttagtattatcctatccctcaataaataataaagcatactcattcagatgaacaccaccatttggatttctttcaccaatgccacaag 4422502  T
Q  101 tttcttatgtcatttcttaatagcattaannnnnnnggttcatagaatagaaccatggacgcagcgccgcatttagcacacgttgccattttgcttgctt 200  Q
    ||||||||||||||||||||||| ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4422501 tttcttatgtcatttcttaatagtattattttttttggttcatagaatagaaccatggacgcagcgccgcatttagcacacgttgccattttgcttgctt 4422402  T
Q  201 caatactaactaagcctctaattagtcctccaagaataaagctgtattaaagatccaaccgtgtggcttgnnnnnnnaataatagtaatctctctattaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  4422401 caatactaactaagcctctaattagtcctccaagaataaagctgtattaaagatccaaccgtgtggcttgtttttttaataatagtaatctctctattaa 4422302  T
Q  301 tctatcacttgaacacttccttaatcaaccccacctttctttatctctaagaaattgatgattctccttgtgtattgtttcacgccaaattgtttagatc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  4422301 tctatcacttgaacacttccttaatcaaccccacctttctttatctctaagaaattgatgattctccttgtgtattgtttcacgccaaatagtttagatt 4422202  T
Q  401 tggaatagattcatgatattgttcaatttactgctttgttattcnnnnnnnnnagtgttacaatgtaacgggcnnnnnnnnnnnnnnnnnnnngagagag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| ||||                    ||| ||     
T  4422201 tggaatagattcatgatattgttcaatttactgctttgttattcattttttttagtgttacaatgtaatgggc-aaaaagaaaaaggaaaaaagagggat 4422103  T
Q  501 attcgaaattaagctccaagcttatctctctattattcattttgatcaagtgatataagtctatttattaattttctaccaatattggtaagtaagaaga 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4422102 attcgaaattaagctccaagcttatctctctattattcattttgatcaagtgatataagtgtatttattaattttctaccaatattggtaagtaagaaga 4422003  T
Q  601 accttgagaa 610  Q
    ||||||||||    
T  4422002 accttgagaa 4421993  T

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