View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_high_4 (Length: 513)
Name: NF4185_high_4
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 10065859 - 10065374
Alignment:
| Q |
18 |
atctttcacttgattttttctttgactacttaactatacttgtttacatgtgatgataggtgccaattttcggcaacatggataaacagttgttggatgc |
117 |
Q |
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| T |
10065859 |
atctttcacttgattttttctttaactacttaactatacttgtttacatgtgatgataggtgccaattttcagcaacatggataaacagttgttggatgc |
10065760 |
T |
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| Q |
118 |
aatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaa |
217 |
Q |
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| T |
10065759 |
aatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaa |
10065660 |
T |
|
| Q |
218 |
cttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggcct |
317 |
Q |
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| T |
10065659 |
cttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggcct |
10065560 |
T |
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| Q |
318 |
tggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgatgacttgaagat |
417 |
Q |
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| T |
10065559 |
tggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgatgacttgaagat |
10065460 |
T |
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| Q |
418 |
tgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatatgttttttcacctttg |
503 |
Q |
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| T |
10065459 |
tgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatatgttttttcacctttg |
10065374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 107 - 488
Target Start/End: Original strand, 48466125 - 48466506
Alignment:
| Q |
107 |
ttgttggatgcaatgtgtgataaactgaagccggtcctttataccgagaaaagtttcgttgttcgtgaaggtgatccagtggacgaaatgctcttcatca |
206 |
Q |
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| T |
48466125 |
ttgttggatgcaatgtgtgatagactgaagccagttctgtatacagagaagagctgcattgttcgcgaagaagatccagttgatgagatgcttttcatta |
48466224 |
T |
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| Q |
207 |
tgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactcgaccgaactcaaggctggtgatttttgtggagaggagcttct |
306 |
Q |
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| T |
48466225 |
tgcgaggaaaagtcgctaccatgacaacaaatggtggaagaactggtttcttcaactcattatttctaatgcctggtgatttttgtggagaggaactttt |
48466324 |
T |
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| Q |
307 |
aacatgggccttggatcctacaacctcttcaaacttacctatttcaactagtacagttgaaactattacggaagttgaagcttttgctctaatgcatgat |
406 |
Q |
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| T |
48466325 |
aacatgggctttggatccaaactcctcctcgaatctacctacttcaactagaacagtagaaactatatcagaagttgaagcatttgcactcaaggctgat |
48466424 |
T |
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| Q |
407 |
gacttgaagattgttgcttcccaatttcgacgtcttattaacagaaaacaactccaacacactttcaggcaaggcttgatat |
488 |
Q |
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| T |
48466425 |
gacttgaagtttgttgcttcccaatttagacgtcttatcaacagcaaacaactccaacacactttcaggtatggcttgatat |
48466506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 41395665 - 41395825
Alignment:
| Q |
165 |
ttgttcgtgaaggtgatccagtggacgaaatgctcttcatcatgcgcggaaaacttaagactgccacgacaaatggtggaagaactggtttctttaactc |
264 |
Q |
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| T |
41395665 |
ttgttcgcgaaggagatcctgttgatgagatgctcttcataatgcgcggaaaattgttgaccgtgacaacaaacggtggaagaacaggtttcttcaactc |
41395764 |
T |
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| Q |
265 |
gaccgaactcaaggctggtgatttttgtggagaggagcttctaacatgggccttggatcct |
325 |
Q |
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| T |
41395765 |
tgaatacctcaaggctggtgacttctgtggagaggagcttctcacatgggcattagatcct |
41395825 |
T |
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