View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_high_7 (Length: 373)

Name: NF4185_high_7
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_high_7
NF4185_high_7
[»] chr4 (12 HSPs)
chr4 (14-358)||(27757621-27757965)
chr4 (75-262)||(27758621-27758800)
chr4 (151-232)||(5415179-5415260)
chr4 (147-211)||(9268355-9268419)
chr4 (134-204)||(34388831-34388901)
chr4 (25-83)||(27761330-27761390)
chr4 (147-211)||(2681117-2681181)
chr4 (151-231)||(23560018-23560098)
chr4 (151-231)||(38567981-38568061)
chr4 (112-231)||(55876000-55876119)
chr4 (157-211)||(206287-206341)
chr4 (156-229)||(52327028-52327101)
[»] chr3 (7 HSPs)
chr3 (154-239)||(20809614-20809699)
chr3 (151-227)||(35846164-35846240)
chr3 (112-211)||(28939697-28939796)
chr3 (151-204)||(14898474-14898527)
chr3 (151-231)||(35424136-35424216)
chr3 (110-231)||(49786946-49787067)
chr3 (151-231)||(40793176-40793256)
[»] chr8 (7 HSPs)
chr8 (151-232)||(11425489-11425570)
chr8 (151-231)||(40278979-40279059)
chr8 (147-211)||(9682370-9682434)
chr8 (156-211)||(37479212-37479267)
chr8 (151-232)||(17312866-17312946)
chr8 (143-204)||(40713779-40713840)
chr8 (156-204)||(16577440-16577488)
[»] chr7 (5 HSPs)
chr7 (151-232)||(44396402-44396483)
chr7 (97-215)||(36725751-36725869)
chr7 (122-232)||(49081222-49081332)
chr7 (156-236)||(22790431-22790511)
chr7 (151-212)||(12879277-12879338)
[»] scaffold0015 (1 HSPs)
scaffold0015 (151-232)||(56602-56683)
[»] chr5 (7 HSPs)
chr5 (151-204)||(14913491-14913544)
chr5 (112-231)||(39060200-39060319)
chr5 (174-232)||(14947686-14947744)
chr5 (143-209)||(34383705-34383771)
chr5 (115-203)||(4925098-4925186)
chr5 (151-231)||(9959331-9959410)
chr5 (151-231)||(10523835-10523915)
[»] chr2 (8 HSPs)
chr2 (110-231)||(9104574-9104695)
chr2 (112-211)||(32914434-32914533)
chr2 (174-232)||(3739901-3739959)
chr2 (112-197)||(3384717-3384802)
chr2 (151-204)||(14657526-14657579)
chr2 (174-231)||(29794380-29794437)
chr2 (156-204)||(29984914-29984962)
chr2 (151-211)||(40095805-40095865)
[»] chr1 (5 HSPs)
chr1 (112-229)||(7900161-7900278)
chr1 (147-211)||(46823642-46823706)
chr1 (156-229)||(7168016-7168089)
chr1 (151-203)||(1035776-1035828)
chr1 (151-211)||(51613278-51613338)
[»] chr6 (3 HSPs)
chr6 (151-231)||(13685398-13685478)
chr6 (156-232)||(10682527-10682603)
chr6 (151-211)||(19763564-19763624)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 27757965 - 27757621
Alignment:
Q  14 attatactaccgtgtcttttgttgtgttggaatataaaaatatatagttaaaaatgacacatactttttacgctttgatgaactattgtggggtgcaatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27757965 attatactaccgtgtcttttgttgtgttggaatataaaaatatatagttaaaaatgacacatactttttacgctttgatgaactattgtggggtgcaatg 27757866  T
Q  114 ggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaag 213  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  27757865 ggaccaattttaatgtttttgatgactgatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaga 27757766  T
Q  214 tgaagcccatttataccattaaatatgatgtcttagatgtgtatgctctaacacgacctttacgttttctatataaattatctattcacctttgccccat 313  Q
    |||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27757765 tgaagtttatttataccatcaaatatgatgtcttagatgtgtatgctctaacacgacctttacgttttctatataaattatctattcacctttgccccat 27757666  T
Q  314 ttaaggtgcaaaatgattaataaaaacatatttaagaatcaaaat 358  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  27757665 ttaaggtgcaaaatgattaataaaagcatatttaagaatcaaaat 27757621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 27758800 - 27758621
Alignment:
Q  75 tactttttacgctttgatgaactattgtggggtgcaatgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggt 174  Q
    ||||||||| | ||| |||||  |||||||||||||||||| ||| |||||| |||||||||       ||  || |||||||||||||||||||||| |    
T  27758800 tactttttaggttttcatgaataattgtggggtgcaatgggccca-ttttaaagtttttgat-------atgaatatttagaaaatgtagtttagttgat 27758709  T
Q  175 taaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccattaaatatgatgtcttagatgtgtatgctct 262  Q
    ||||||||| ||||| || |||||||||||||||||| ||||||  ||||||||||||||||||  |||||||||| |||||||||||    
T  27758708 taaataattaaaaaggatgaaataatataaaatattaggtgaagttcatttataccattaaatagaatgtcttagacgtgtatgctct 27758621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 5415260 - 5415179
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    |||||||||||||||| |||  ||||||||||||  |||| |||| |||||||| |||||| ||| | ||||||||||||||    
T  5415260 tttagaaaatgtagttgagtgagttaaataattgggaagtgtaaagtaatataatatattatgtggatcccatttataccat 5415179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 9268419 - 9268355
Alignment:
Q  147 gatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| | || ||||||||| |||||    
T  9268419 gatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta 9268355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 34388901 - 34388831
Alignment:
Q  134 gatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    |||||| |||||  || |||||||||||| ||||||| | ||||||||||||||| | |||||||||||||    
T  34388901 gatgagtgatatgaatatttagaaaatgtggtttagtggtttaaataattgaaaaatgtaaaataatataa 34388831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 27761390 - 27761330
Alignment:
Q  25 gtgtcttttgttgtgttggaatataaaaatatat--agttaaaaatgacacatacttttta 83  Q
    ||||||||||||| |||| |||||||||||||||  |||| ||||||| ||||||||||||    
T  27761390 gtgtcttttgttgagttgaaatataaaaatatatagagttgaaaatgaaacatacttttta 27761330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 2681117 - 2681181
Alignment:
Q  147 gatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||||||| |||||||| ||| | ||||||||||||||||| | || ||||||||| |||||    
T  2681117 gatgtttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta 2681181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 23560098 - 23560018
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||||||||| ||| | ||||||||||| ||||| |||| |||| ||| |||||| |||   |||||||||||||    
T  23560098 tttagaaaatgtagttgagtggtttaaataattggaaagtgtaaagtaatgtaatatattatgtgggtcccatttatacca 23560018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 38567981 - 38568061
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||| ||||||||||| ||| | ||||||||||||||||||  || |||||||| ||||| ||||| | ||||| ||||||    
T  38567981 tttaaaaaatgtagttgagtggtttaaataattgaaaagtaagaagtaatataatatattgagtgaggtccattcatacca 38568061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 55876119 - 55876000
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||||||| ||  ||||| | |||||| ||| ||| |||||||| ||||||| | | | |||||||||||| |||| | || |||||||| ||||||    
T  55876119 tgggaccaattgtagagttttgggtgaggggtatggatatttagaaagtgtagttgaatagtttaaataattgagaagtgtgaagtaatataatatatta 55876020  T
Q  212 agtgaagcccatttatacca 231  Q
    |||   | ||||||||||||    
T  55876019 agtagggtccatttatacca 55876000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 206287 - 206341
Alignment:
Q  157 aaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||| ||||| | ||| ||||||||||||||| ||| ||||||||||||||||||    
T  206287 aaatatagttgaattgtttaaataattgaaaaatatgaaataatataaaatatta 206341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 52327028 - 52327101
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatac 229  Q
    ||||||||||| |||   ||||||||||||||||| | || ||||||||||||||| |||   |||||||||||    
T  52327028 aaaatgtagttgagtgatttaaataattgaaaagtgtgaagtaatataaaatattatgtgggacccatttatac 52327101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 20809699 - 20809614
Alignment:
Q  154 agaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccattaaatat 239  Q
    ||||||| ||||| ||||| |||||||||| |||||||| || |||||||||||||||||| ||| | ||||||||||| ||||||    
T  20809699 agaaaatatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatattaagtcaagtctatttataccatcaaatat 20809614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 35846240 - 35846164
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttat 227  Q
    |||||||||||||||| | | | ||||||||||||||||| |||||||||||||| ||||| ||||  |||||||||    
T  35846240 tttagaaaatgtagttgaatggtttaaataattgaaaagtgtaaaataatataaagtattacgtgagacccatttat 35846164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 28939796 - 28939697
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||||||| ||  ||||| |||||| |||||  || |||||||||||||||| ||| | |||||||||||| |||| | || |||||||| ||||||    
T  28939796 tgggaccaattgtagagttttggatgagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaagtgtgaagtaatataatatatta 28939697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 14898474 - 14898527
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    |||||||||||||||||||| | ||||| ||||||||| | |||||||||||||    
T  14898474 tttagaaaatgtagtttagtggtttaaacaattgaaaaatgtaaaataatataa 14898527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 35424216 - 35424136
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||||||||| ||| | ||||||||||||||| | | || ||||||||  ||||| ||||  |||||||||||||    
T  35424216 tttagaaaatgtagttgagtggtttaaataattgaaaaatgtgaagtaatataatgtattatgtgagacccatttatacca 35424136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 49787067 - 49786946
Alignment:
Q  110 aatgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatat 209  Q
    ||||| ||| ||||||| ||||| |||||| | |||  || |||| ||||| ||||| ||| | |||||||||||| | |||  ||||||||||| ||||    
T  49787067 aatggaacccattttaaagttttagatgagtggtatgaatatttataaaatatagttgagtggtttaaataattgagatgtaagaaataatataatatat 49786968  T
Q  210 taagtgaagcccatttatacca 231  Q
    ||  |||  |||||||||||||    
T  49786967 tatatgagtcccatttatacca 49786946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 40793256 - 40793176
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||| ||||||||||| ||| | |||||||||||||||||   || ||||||||| ||||| ||| |  ||||||||||||    
T  40793256 tttataaaatgtagttgagtggtttaaataattgaaaagtgagaagtaatataaagtattacgtggaatccatttatacca 40793176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 11425570 - 11425489
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    |||||||||||||||| ||| |||||||||||||  |||| |||| |||||||| |||||| ||| | ||||||||||||||    
T  11425570 tttagaaaatgtagttgagtcggttaaataattgggaagtgtaaagtaatataatatattatgtggatcccatttataccat 11425489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 40278979 - 40279059
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||||||||| ||| | ||||||||||| |||||||||| |||||||| |||||| |||   |||||||||||||    
T  40278979 tttagaaaatgtagttgagtggtttaaataattggaaagtataaagtaatataatatattatgtgggtcccatttatacca 40279059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 9682370 - 9682434
Alignment:
Q  147 gatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| | || ||||||||| |||||    
T  9682370 gatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta 9682434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 37479212 - 37479267
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||||||| ||| | ||||||||||||||||| |||| |||||||| ||||||    
T  37479212 aaaatgtagttgagtggtttaaataattgaaaagtttaaagtaatataatatatta 37479267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 17312866 - 17312946
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    ||||||| |||||||| ||| | ||||||||||||||||| | || ||||||||| |||| | |||  ||||||||||||||    
T  17312866 tttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatt-actgagacccatttataccat 17312946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 40713840 - 40713779
Alignment:
Q  143 tatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    ||||||| |||| ||||||| ||||| ||| |||||||||| |||||| | |||||||||||    
T  40713840 tatagatatttaaaaaatgtggtttacttgtttaaataatttaaaagtgtgaaataatataa 40713779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 16577488 - 16577440
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    ||||| ||||||| ||| ||||||||||||||| | |||||||||||||    
T  16577488 aaaatatagtttacttgtttaaataattgaaaaatgtaaaataatataa 16577440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 44396402 - 44396483
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    |||||||||||||||| ||| |||||||||||||  |||| |||| |||||||| |||||| ||| | ||||||||||||||    
T  44396402 tttagaaaatgtagttgagtgggttaaataattgggaagtgtaaagtaatataatatattatgtggatcccatttataccat 44396483  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 36725751 - 36725869
Alignment:
Q  97 tattgtggggtgcaatgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaa 196  Q
    |||||||||||  | | ||||| ||||||  |||||||||||  | |||  || |||||||| ||||||| ||| | |||||||||||| |||| |||||    
T  36725751 tattgtggggtttagtaggacccattttagagtttttgatgaatggtatgaatatttagaaattgtagttgagtggtttaaataattgagaagtgtaaaa 36725850  T
Q  197 taatataaaatattaagtg 215  Q
    |||||||||  ||||||||    
T  36725851 taatataaagaattaagtg 36725869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 49081222 - 49081332
Alignment:
Q  122 tttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagccc 221  Q
    ||||| ||||| |||||| | |||| || |||||||||||||| | | |   ||||||||||||||| |||||||||||||||  |||||  |||  |||    
T  49081222 tttaaagttttagatgagtggtataaatatttagaaaatgtagatgaatgatttaaataattgaaaaatataaaataatataatgtattatatgagaccc 49081321  T
Q  222 atttataccat 232  Q
    |||||||||||    
T  49081322 atttataccat 49081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 22790511 - 22790431
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccattaaa 236  Q
    ||||||||||| | ||| ||||||||||||||||  |||||||||| ||||||||  ||||   |||||||||||| ||||    
T  22790511 aaaatgtagttgaattgtttaaataattgaaaagcgtaaaataatacaaaatattgtgtgagatccatttataccactaaa 22790431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 12879338 - 12879277
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaa 212  Q
    |||||||||| |||||  |||| |||||||||||| |||| | || ||||||||||||||||    
T  12879338 tttagaaaatatagttgtgttgtttaaataattgagaagtgtgaagtaatataaaatattaa 12879277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 56602 - 56683
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    |||||||||||||||| ||| | |||||||||||| |||| |||| |||||||| |||||| |||   ||||||||||||||    
T  56602 tttagaaaatgtagttgagtggtttaaataattgagaagtgtaaagtaatataatatattatgtgggtcccatttataccat 56683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 14913544 - 14913491
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||||||||    
T  14913544 tttagaaaatatagtttagtagtttaaataattgaaaagtgtaaaataatataa 14913491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 39060319 - 39060200
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||| ||||||| ||||| || ||| ||||| ||| |||||||||| ||||| ||| | ||||||||| ||||||| | || ||||||||  |||||    
T  39060319 tgggacctattttaaagttttagaggagtgatatggatatttagaaaatatagttgagtggtttaaataatcgaaaagtgtgaagtaatataatgtatta 39060220  T
Q  212 agtgaagcccatttatacca 231  Q
     |||   |||||||||||||    
T  39060219 tgtgggacccatttatacca 39060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 14947744 - 14947686
Alignment:
Q  174 ttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    |||||||||||||||||||||| ||||||||||||||| |||    |||||||||||||    
T  14947744 ttaaataattgaaaagtataaagtaatataaaatattatgtgggatccatttataccat 14947686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 34383705 - 34383771
Alignment:
Q  143 tatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatat 209  Q
    ||||||| ||||||||||||||||| || | |||||||||||| |||| |||| |||||||| ||||    
T  34383705 tatagatatttagaaaatgtagttttgtggtttaaataattgagaagtgtaaagtaatataatatat 34383771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 4925186 - 4925098
Alignment:
Q  115 gaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatata 203  Q
    |||| ||||||  ||||| || ||| ||||| ||| |||| ||||||||||| ||| | ||||||||||||||||| | || |||||||    
T  4925186 gacctattttagagttttggaagagtgatatggatatttaaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 9959331 - 9959410
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||||||||| ||| | ||||||||||| ||||| | || || |||||| ||||| ||| | |||||||||||||    
T  9959331 tttagaaaatgtagttgagtagtttaaataattggaaagtgtgaagtagtataaagtattacgtgga-cccatttatacca 9959410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 10523915 - 10523835
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||||||  | ||| | |||||||||| |||||| |||||||||||||  |||| ||||  | ||||||||||||    
T  10523915 tttagaaaatgtaagtgagtggtttaaataattaaaaagtgtaaaataatataatgtattgagtggggtccatttatacca 10523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 9104695 - 9104574
Alignment:
Q  110 aatgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatat 209  Q
    ||||| ||| |||||||  |||| || ||| | ||||||| |||| ||||||||||| ||| | |||||||||||| || | | ||||||||||||||||    
T  9104695 aatggaacccattttaaaattttagaagagtggtatagatatttaaaaaatgtagttgagtggtttaaataattgagaattgtgaaataatataaaatat 9104596  T
Q  210 taagtgaagcccatttatacca 231  Q
    ||  |||  |||||||||||||    
T  9104595 tagatgagacccatttatacca 9104574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 32914434 - 32914533
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaa-tgtagtttagttggttaaataattgaaaagtataaaataatataaaatatt 210  Q
    ||||||| ||||||  |||||||| ||| | ||| ||| ||||||||| ||||||| ||| | ||||||||||||||||| | || ||||||||||||||    
T  32914434 tgggacctattttagagtttttga-gagtggtatggatatttagaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaaatatt 32914532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 3739901 - 3739959
Alignment:
Q  174 ttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    ||||||||||||||| |||||||||||||||  ||||| ||||  || |||||||||||    
T  3739901 ttaaataattgaaaaatataaaataatataatgtattatgtgagacctatttataccat 3739959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 3384802 - 3384717
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaat 197  Q
    ||||||| |||||||  ||||||||||| |||||  || |||| ||||||||||| | ||| ||||||||||  ||||| ||||||    
T  3384802 tgggacccattttaaattttttgatgagtgatatgaatatttataaaatgtagttgaattgtttaaataattagaaagtgtaaaat 3384717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 14657526 - 14657579
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    |||||||||||||||| ||| | ||||||||||| ||||| | |||||||||||    
T  14657526 tttagaaaatgtagttgagtggtttaaataattggaaagtgtgaaataatataa 14657579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 29794380 - 29794437
Alignment:
Q  174 ttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    ||||||||| ||||||| | ||||||||||| |||||| ||| || ||||||||||||    
T  29794380 ttaaataatcgaaaagtgtgaaataatataatatattaggtggagtccatttatacca 29794437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 29984962 - 29984914
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataa 204  Q
    ||||| ||||| ||||| |||||||||| | ||||||||||||||||||    
T  29984962 aaaatttagttgagttgtttaaataattaagaagtataaaataatataa 29984914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 40095805 - 40095865
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||| ||||||||||| ||| | |||||||||||| |||| |||| |||||||| ||||||    
T  40095805 tttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatataatatatta 40095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 7900278 - 7900161
Alignment:
Q  112 tgggaccaattttaatgtttttgatgagggatatagatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||| ||||||  ||||| || ||| | ||| ||| |||||||||||||||| ||| | |||||||||||  ||||||||| |||||||| ||||||    
T  7900278 tgggacccattttagagttttagaggagtggtatggatatttagaaaatgtagttgagtggtttaaataattgggaagtataaagtaatataatatatta 7900179  T
Q  212 agtgaagcccatttatac 229  Q
     |||   |||||||||||    
T  7900178 tgtgggtcccatttatac 7900161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 46823642 - 46823706
Alignment:
Q  147 gatgtttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||||||||||||||||||| ||| | ||||||||||||||||| | || ||||||||| |||||    
T  46823642 gatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta 46823706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 7168016 - 7168089
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatac 229  Q
    |||||||||||  || | ||||||||||| ||| | |||| ||||||||||||||| ||||  |||||||||||    
T  7168016 aaaatgtagttgggtggtttaaataattggaaaatgtaaagtaatataaaatattatgtgagacccatttatac 7168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 1035828 - 1035776
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatata 203  Q
    |||||||||| ||||||||| | |||||||||||| |||| | ||||||||||    
T  1035828 tttagaaaatatagtttagtggtttaaataattgagaagtgtgaaataatata 1035776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 51613338 - 51613278
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    |||||||||||||||| ||| | ||||||||||| ||||| | || ||||||||| |||||    
T  51613338 tttagaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataaattatta 51613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 13685478 - 13685398
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttatacca 231  Q
    |||||||||| ||||| |||   |||||||||||||||||||||||||||||||  ||||| |||   |||||||||||||    
T  13685478 tttagaaaatatagttgagtgttttaaataattgaaaagtataaaataatataatgtattatgtgggacccatttatacca 13685398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10682527 - 10682603
Alignment:
Q  156 aaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatattaagtgaagcccatttataccat 232  Q
    ||||||||||| ||| | |||||||||||| |||| | || |||||||| ||||||||||  | ||||||| |||||    
T  10682527 aaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtccatttaaaccat 10682603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 19763624 - 19763564
Alignment:
Q  151 tttagaaaatgtagtttagttggttaaataattgaaaagtataaaataatataaaatatta 211  Q
    ||||||||||||| || ||| | ||||||||||| ||||| | || |||||||||||||||    
T  19763624 tttagaaaatgtaattaagtggtttaaataattggaaagtgtgaagtaatataaaatatta 19763564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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