View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4185_low_1 (Length: 904)
Name: NF4185_low_1
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 224 - 894
Target Start/End: Original strand, 44681122 - 44681806
Alignment:
| Q |
224 |
ttaagtggtataagatatgttaagtattatatcattttagattgttcaatgatcttttatgctgtgaattttgtgatttaggnnnnnnnttcggataatg |
323 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||| ||||||||| || |||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
44681122 |
ttaagtgctataagatatgttcagtattgtatcattt-agattgttcgataatcttttatgctgtgaattttgtgatttgagaaaaaatttctgataatg |
44681220 |
T |
|
| Q |
324 |
cttttgatttgcaaatttattttcttgatgaaactgtg-ccttttgtttctttcaaatgagttat-------------tcagctggtaacacaatatgtt |
409 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||||||||||| |
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| T |
44681221 |
cttttgatttacaaatttatttacttgatgaaactgtggccttttgtttctttcaaatcagttatgttgcaaatgttttctgctggtaacacaatatgtt |
44681320 |
T |
|
| Q |
410 |
aggtatgtttgattgtcgggtccaattgttttacgattgtccctcttagccagtgttttctttacatcaaattctgccatgaagaatattgtttttgata |
509 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44681321 |
aggtatgtttgattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgccatgaagaatattgtttttgata |
44681420 |
T |
|
| Q |
510 |
atctttttcagtatttcaactctccaactctatttttgttgcatcgtgcatttccttcattgattggcttctagtttaacagtcttaatgcgtaaatgta |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44681421 |
atctttttcagtatttcaactctccaactctatttttgttgcatcgtgcatttccttcattgattggcttctagtttaacagacttaatgcgtaaatgta |
44681520 |
T |
|
| Q |
610 |
cca-gttaaacaagaaaatctatagcagaggtttctaagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgttt |
708 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44681521 |
caaagttaaacaagaaaatctatagcagaggtttctgagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgttt |
44681620 |
T |
|
| Q |
709 |
cgatatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtctaatgtctatatgtggctg |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44681621 |
cgatatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtctaatgtctatatgtggctg |
44681720 |
T |
|
| Q |
809 |
ctttagaagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtattgatgatgt |
894 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44681721 |
ctttagaagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtattgatgatgt |
44681806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 44652007 - 44652525
Alignment:
| Q |
17 |
acttagcttataatttaagctaactgtggaagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44652007 |
acttagcttataatttaagctaactgtggaagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgt |
44652106 |
T |
|
| Q |
117 |
atcattnnnnnnnnnttt----cttttttgtgaatcaatatatagaatttgttttcacgatcatacatccttcctaaagatacactttgttgcttcacgg |
212 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
44652107 |
atcattaaaaaaatatatatatcttttttgtgaatcaatatatagaatttgttttcacgatcatacatccttcctaaagatacactttatagcttcacgg |
44652206 |
T |
|
| Q |
213 |
gacgcgataatttaagtggtataagatatgttaagtattatatcattttagattgttcaatgatcttttatgctgtgaattttgtgatttaggnnnnnnn |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
44652207 |
gacgcgataatttaagtggtataagatatgttaagtattgtatcattttagattgttcaataatcttttatgctgtgaattttgtgatctaggaaaaaaa |
44652306 |
T |
|
| Q |
313 |
ttcggataatgcttttgatttgcaaatttattttcttgatgaaactgt-gccttttgtttctttcaaatgagttattcagctggtaacacaatatgttag |
411 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44652307 |
ttctgataatgcttttgatttgcaaatttattttcttgatgaaactgtggccttttgtttctttcaaatgagttattcagctggtaacacaatatgttag |
44652406 |
T |
|
| Q |
412 |
gtatgtttgattgtcgggtccaattgttttacgattgtccctcttagccagtgttttctttacatcaaattctgccatgaagaatattgtttttgataat |
511 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44652407 |
gtatgttttattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgccatgaagaatattgtttttgataat |
44652506 |
T |
|
| Q |
512 |
ctttttcagtatttcaactct |
532 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
44652507 |
c--tttcagtatttcaactct |
44652525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 627 - 894
Target Start/End: Original strand, 44652523 - 44652792
Alignment:
| Q |
627 |
tctatagcagaggtttctaagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgtttcgatatatttgtactgtt |
726 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
44652523 |
tctatagcagaggtttctaacatttttattggcatgaaaa-tttgatttctctcttgttgaggactatgtcgtgatatgtttcgatatatttgtactgtt |
44652621 |
T |
|
| Q |
727 |
tgttttaccattgctatgtgttcgagagttggagg-ttactaggattgcatgaagtcttctgtctaatgtctatatgtggctgctttagaagtgtttatt |
825 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||| | ||||||||| |
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|
| T |
44652622 |
tgttttaccattgctatgtgtctgagacttggaggtttactaggattgcatgaagtcttctgtctaatgtctaaacgcggctgctttaaatgtgtttatt |
44652721 |
T |
|
| Q |
826 |
cggaatgatttgaaattcttgcatg--atacaattctcatcctcataatttgtattctgtattgatgatgt |
894 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
44652722 |
cggaatgatttgaaattcttgcatgatatataattctcatccgcatactttgtattctgtattgatgatgt |
44652792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 44680831 - 44680932
Alignment:
| Q |
17 |
acttagcttataatttaagctaactgtggaagaaagaactcttccaagtcaggtttaatttgaggtgacaattctcatgattttccctgtattttcttgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44680831 |
acttagcttataatttaagctaactgtggaaga----actcttccaagtcagctttactttgaggtgacaattctcatgattttccctgtattttcttgt |
44680926 |
T |
|
| Q |
117 |
atcatt |
122 |
Q |
| |
|
|||||| |
|
|
| T |
44680927 |
atcatt |
44680932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 885
Target Start/End: Original strand, 44631013 - 44631285
Alignment:
| Q |
604 |
aatgtaccagttaaacaagaaaatctatagcagaggtttctaagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgata |
703 |
Q |
| |
|
|||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||| | | ||| | ||| ||||||||||||||| ||||| |
|
|
| T |
44631013 |
aatgtaccagttaaacaagatatcctatagtagaggtttctaggatttgtattggcatgaaata-tcgatctttctgttgttgaggactatgtcgtgacg |
44631111 |
T |
|
| Q |
704 |
tgtttcgatatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtctaatgtctatatgt |
803 |
Q |
| |
|
|| ||||||||| || || ||||| |||||| | | ||||| | ||| ||||||||||| ||| || | ||||| |||| || |||||||| |
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|
| T |
44631112 |
tg-ttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttc-------tgcctatatgt |
44631203 |
T |
|
| Q |
804 |
ggctgctttagaagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtat |
885 |
Q |
| |
|
|||| | || || ||||| ||| ||| |||||| ||||||||||||| ||||||||| |||| | ||||||| |||||| |
|
|
| T |
44631204 |
ggcttgtatataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtat |
44631285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 44630567 - 44630626
Alignment:
| Q |
19 |
ttagcttataatttaagctaactgtggaagaaagaactcttccaagtcaggtttaatttg |
78 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||| ||||| |
|
|
| T |
44630567 |
ttagcttataattcaagctaactgtggaagaaacaacttttccaagtcagctttgatttg |
44630626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 44630644 - 44630694
Alignment:
| Q |
71 |
ttaatttgaggtgacaattctcatgattttccctgtattttcttgtatcat |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
44630644 |
ttaatttgaggtgacaattctgatgattttctccgtattttcttgtatcat |
44630694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 791
Target Start/End: Complemental strand, 44637833 - 44637646
Alignment:
| Q |
603 |
aaatgtaccagttaaacaagaaaatctatagcagaggtttctaagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgat |
702 |
Q |
| |
|
||||||||| ||| ||||| ||| |||||| ||||||||||| ||||| || ||||||| ||| | | ||||| ||| |||||||||| | |||| |
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|
| T |
44637833 |
aaatgtacccgtttaacaataaatactatagtagaggtttctaggatttgtactggcatgtaaacatggcac-ctctcctgtcgaggactatgtcatgat |
44637735 |
T |
|
| Q |
703 |
atgtttcgatatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtcta |
791 |
Q |
| |
|
| |||||||| ||| || ||||| || |||||||| |||||| | ||| ||||||||||| |||||| ||||||| |||||||||| |
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|
| T |
44637734 |
ggggttcgatatgtttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtcta |
44637646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 500
Target Start/End: Original strand, 44625269 - 44625376
Alignment:
| Q |
393 |
tggtaacacaatatgttaggtatgtttgattgtcgggtccaattgttttacgattgtccctcttagccagtgttttctttacatcaaattctgccatgaa |
492 |
Q |
| |
|
|||||||| || ||||||| ||||||| ||||| | || |||||| ||||| ||||||||||| || ||| |||| |||| ||||||||||| | || |
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|
| T |
44625269 |
tggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgcaagtattttaattacttcaaattctgcagtaaa |
44625368 |
T |
|
| Q |
493 |
gaatattg |
500 |
Q |
| |
|
|||||||| |
|
|
| T |
44625369 |
gaatattg |
44625376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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