View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_low_11 (Length: 324)

Name: NF4185_low_11
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_low_11
NF4185_low_11
[»] chr2 (2 HSPs)
chr2 (17-149)||(15000813-15000944)
chr2 (17-149)||(9311163-9311294)
[»] chr6 (2 HSPs)
chr6 (17-128)||(9814931-9815041)
chr6 (15-128)||(16694170-16694282)
[»] chr7 (1 HSPs)
chr7 (17-128)||(44060155-44060265)
[»] chr5 (1 HSPs)
chr5 (17-128)||(15598894-15599004)
[»] chr4 (3 HSPs)
chr4 (21-128)||(27733694-27733800)
chr4 (17-78)||(18694238-18694298)
chr4 (17-78)||(51533760-51533820)
[»] chr3 (1 HSPs)
chr3 (17-121)||(17954796-17954899)
[»] scaffold0002 (3 HSPs)
scaffold0002 (41-128)||(406997-407084)
scaffold0002 (15-128)||(424355-424467)
scaffold0002 (60-128)||(413016-413084)
[»] chr1 (1 HSPs)
chr1 (17-110)||(17478744-17478835)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 15000813 - 15000944
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15000813 atttacaaatctagta-gccgtataaaattctaatattccgcaaccgtttatacgcatgaaaatccacactttgtaaatatttccaatcaaataggtata 15000911  T
Q  117 cttcaacgaaaagttcgacattttaaagacatg 149  Q
    |||||||||||||||||||||||||| ||||||    
T  15000912 cttcaacgaaaagttcgacattttaaggacatg 15000944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 9311163 - 9311294
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    |||||||||||||||| | |||| |||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  9311163 atttacaaatctagta-gtcgtacaaaattctaataatccgcaaccgtttatacgcatgaaaatacacactttgtaaatatttccaatcaaataggtata 9311261  T
Q  117 cttcaacgaaaagttcgacattttaaagacatg 149  Q
    ||||||||||||||  ||||| |||||||||||    
T  9311262 cttcaacgaaaagtaagacatcttaaagacatg 9311294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 9815041 - 9814931
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    ||||||||||||| || ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  9815041 atttacaaatctaata-gccgtataaaattctaataatccacaaccgtttatacgcatgaaaatccacactttgtaaatatttccaatcaaataggaata 9814943  T
Q  117 cttcaacgaaaa 128  Q
    ||||||||||||    
T  9814942 cttcaacgaaaa 9814931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 16694170 - 16694282
Alignment:
Q  15 tcatttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggta 114  Q
    |||||| |||| ||||||| |||||||||||| |||||||| ||||| ||||||| | |||||||| ||||| ||||||||||||||||||||||| |||    
T  16694170 tcattttcaaaactagtaa-ccgtataaaattctaataatctgcaactgtttatatgcatgaaaattcacacattgtaaatatttccaatcaaataagta 16694268  T
Q  115 tacttcaacgaaaa 128  Q
    ||||||||||||||    
T  16694269 tacttcaacgaaaa 16694282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 44060155 - 44060265
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  44060155 atttacaaatctagta-gccgtataaaattctaataatccgcaaccctttatgcgcatgaaaatccacacattgtaaatatttccaatcaaataggtata 44060253  T
Q  117 cttcaacgaaaa 128  Q
    | ||||||||||    
T  44060254 cgtcaacgaaaa 44060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 15599004 - 15598894
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||    
T  15599004 atttacaaatctagta-gccatatgaaattctaataatccgcaaccgtttatacgcatgaaaatccacccattgtaactatttccaatcaaataggtata 15598906  T
Q  117 cttcaacgaaaa 128  Q
    ||||||||||||    
T  15598905 cttcaacgaaaa 15598894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 27733694 - 27733800
Alignment:
Q  21 acaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtatacttc 120  Q
    |||||||||||| ||||||||||||| |||||||||||| || ||||||||  ||||||| ||||| || |||||||||||||||||||| |||||||||    
T  27733694 acaaatctagta-gccgtataaaattctaataatccgcagccatttatacgcgtgaaaattcacacattttaaatatttccaatcaaataagtatacttc 27733792  T
Q  121 aacgaaaa 128  Q
    ||||||||    
T  27733793 aacgaaaa 27733800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 18694238 - 18694298
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaa 78  Q
    |||||||||  |||||| ||||||||||||||| |||||||||| |||||||||| ||||||    
T  18694238 atttacaaaaatagtaa-ccgtataaaattatattaatccgcaatcgtttatacgcatgaaa 18694298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 51533820 - 51533760
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaa 78  Q
    |||||||||  |||||| ||||||||||||||| |||||||||| |||||||||| ||||||    
T  51533820 atttacaaaaatagtaa-ccgtataaaattatattaatccgcaatcgtttatacgcatgaaa 51533760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 17954796 - 17954899
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtata 116  Q
    |||||||||||||||  ||||||||||||| ||||||| ||||||||||||||||  | ||||| ||||| || |||||||||||||||||||| |||||    
T  17954796 atttacaaatctagtt-gccgtataaaattctaataattcgcaaccgtttatacgcgtaaaaattcacacattttaaatatttccaatcaaataagtata 17954894  T
Q  117 cttca 121  Q
    |||||    
T  17954895 cttca 17954899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 406997 - 407084
Alignment:
Q  41 aaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtatacttcaacgaaaa 128  Q
    ||||||||| |||||||||||| ||||||   ||| |||| ||||| || |||||||||||||||||||| |||||||| ||||||||    
T  406997 aaaattatagtaatccgcaaccatttataaacatggaaattcacacattttaaatatttccaatcaaataagtatacttaaacgaaaa 407084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 424355 - 424467
Alignment:
Q  15 tcatttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggta 114  Q
    ||||||||||| ||| ||| ||||| |||||| || |||||| |||| |||||||   ||| |||| ||||| || |||||||||||||||||||| | |    
T  424355 tcatttacaaaactaataa-ccgtacaaaattctagtaatccacaactgtttataaacatggaaattcacacattttaaatatttccaatcaaataagca 424453  T
Q  115 tacttcaacgaaaa 128  Q
    ||||||||||||||    
T  424454 tacttcaacgaaaa 424467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 413016 - 413084
Alignment:
Q  60 accgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaataggtatacttcaacgaaaa 128  Q
    |||||||||||  |||||||| ||||| || ||| |||||||||||||||| ||||||||||| |||||    
T  413016 accgtttatacacatgaaaattcacacattttaattatttccaatcaaataagtatacttcaatgaaaa 413084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 17478744 - 17478835
Alignment:
Q  17 atttacaaatctagtaagccgtataaaattataataatccgcaaccgtttatacgaatgaaaatccacactttgtaaatatttccaatcaaata 110  Q
    |||||||||  |||||| |||||||||||| || ||| |||||| |||||||||| |||| |||  |||| || ||||||||||||||||||||    
T  17478744 atttacaaaaatagtaa-ccgtataaaattctattaacccgcaatcgtttatacgcatgataatttacac-ttataaatatttccaatcaaata 17478835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University