View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_low_13 (Length: 313)

Name: NF4185_low_13
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_low_13
NF4185_low_13
[»] chr3 (5 HSPs)
chr3 (150-273)||(7942102-7942229)
chr3 (94-208)||(23231705-23231819)
chr3 (81-152)||(2474436-2474507)
chr3 (81-154)||(9609030-9609103)
chr3 (106-139)||(37754050-37754083)
[»] chr7 (2 HSPs)
chr7 (97-244)||(27754856-27755003)
chr7 (27-244)||(39298368-39298579)
[»] chr2 (3 HSPs)
chr2 (21-244)||(33037365-33037588)
chr2 (186-244)||(33019471-33019529)
chr2 (168-244)||(33025869-33025945)
[»] chr6 (2 HSPs)
chr6 (97-181)||(24418155-24418239)
chr6 (104-141)||(19118335-19118372)
[»] chr5 (2 HSPs)
chr5 (97-211)||(20305097-20305211)
chr5 (97-211)||(20309501-20309615)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 7942229 - 7942102
Alignment:
Q  150 aaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgcata----gaatttcagcgatgagatcgaaggtgagagtgggtagtggt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||| ||||||||||||||||||||||||||||||    
T  7942229 aaggagttgttgagacagcgaagttgaaggagatgctttacggatagtctgcatatatagaatttcagcaatgagatcgaaggtgagagtgggtagtggt 7942130  T
Q  246 gatgaagttagggtttcggtggaggtga 273  Q
    ||||||||||||||||||||||||||||    
T  7942129 gatgaagttagggtttcggtggaggtga 7942102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 23231705 - 23231819
Alignment:
Q  94 tgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacggg 193  Q
    ||||||| ||||||||||||||||||||||| || ||||| |||||||    ||| ||||| ||  ||||||| |||||||| |||||  |||| || ||    
T  23231705 tgattgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacagg 23231804  T
Q  194 tagtctgcatagaat 208  Q
     ||||||||||||||    
T  23231805 aagtctgcatagaat 23231819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 2474507 - 2474436
Alignment:
Q  81 aggtggtggcgtttgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaag 152  Q
    ||||||||||| ||| |||| ||  |||||||||||||||||||| | |||| ||| |||||| ||||||||    
T  2474507 aggtggtggcgcttgtttgataattgaaggtgtttctttgcgaatctgggattggaaattaaagaattaaag 2474436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 9609030 - 9609103
Alignment:
Q  81 aggtggtggcgtttgattgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaagga 154  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||||| ||||| || ||||  ||||| |||||    
T  9609030 aggtggtggcgcttgattgataaacgaaggtgcttcttggcgaatttcggatctgaaattaggtaattgaagga 9609103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 37754050 - 37754083
Alignment:
Q  106 gaaggtgtttctttgcgaattttggatcggagat 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  37754050 gaaggtgcttctttgcgaattttggatcggagat 37754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 244
Target Start/End: Complemental strand, 27755003 - 27754856
Alignment:
Q  97 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 196  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||   ||| || | ||||||||| ||   ||| ||||| ||    
T  27755003 ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaag 27754904  T
Q  197 tctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 244  Q
      |||| ||||| ||  ||||||||||||| || |||||||| |||||    
T  27754903 catgcacagaatctcttcgatgagatcgaatgtaagagtgggaagtgg 27754856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 244
Target Start/End: Complemental strand, 39298579 - 39298368
Alignment:
Q  27 attggggaatcaaagagaagaaactcttttgattcatttgtagagcttaccagaaggtggtggcg-tttgattgagaagcgaaggtgtttctttgcgaat 125  Q
    |||||||||||||| ||||||||||| | | | |||||||||||||||||||  |||||||||||   |||||       ||||||| ||||| ||||||    
T  39298579 attggggaatcaaacagaagaaactcctgtaactcatttgtagagcttaccatgaggtggtggcgccatgatt-------gaaggtgcttcttcgcgaat 39298487  T
Q  126 tttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgagatcga 225  Q
    || ||||| ||||||| | | ||  || | ||   ||||||  |||||||||||||  |||| || ||||  ||  ||||||||||||||||||||||||    
T  39298486 ttgggatctgagattagagatttccagaactttccgagacattgaagttgaaggaggagcttcactggtaacctagatagaatttcagcgatgagatcga 39298387  T
Q  226 aggtgagagtgggtagtgg 244  Q
    |||| |||| ||| |||||    
T  39298386 aggtaagagagggaagtgg 39298368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 244
Target Start/End: Complemental strand, 33037588 - 33037365
Alignment:
Q  21 gaggggattggggaatcaaagagaagaaactcttttgattcatttgtagagcttaccagaaggtggtggcgtttgattgagaagcgaaggtgtttctttg 120  Q
    ||||| |||||||||||||||||||  ||||| | | | || ||  ||||||||| ||  || ||||||||  || |||| | |||||| |||||||| |    
T  33037588 gagggcattggggaatcaaagagaactaactcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgtttcttag 33037489  T
Q  121 cgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgag 220  Q
    ||||||| ||||| || |||||  |||| |  || ||   |||||| |||||||||| |||  | ||||| || |||||||||||||||||||||| |||    
T  33037488 cgaatttaggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgag 33037389  T
Q  221 atcgaaggtgagagtgggtagtgg 244  Q
    ||| || |  ||||||||||||||    
T  33037388 atcaaacggaagagtgggtagtgg 33037365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 33019529 - 33019471
Alignment:
Q  186 tttacgggtagtctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 244  Q
    ||||| || |||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  33019529 tttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtgg 33019471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 33025945 - 33025869
Alignment:
Q  168 cgaagttgaaggagatgctttacgggtagtctgcatagaatttcagcgatgagatcgaaggtgagagtgggtagtgg 244  Q
    |||||||||| |||  | ||||| || |||||||||||||||||||||||||||||||| |  ||||| ||||||||    
T  33025945 cgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtgg 33025869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 24418155 - 24418239
Alignment:
Q  97 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggag 181  Q
    |||| ||||||||||| || ||||||||||| ||||| ||||||||  |||| ||||| |||  |||||||||||||||||||||    
T  24418155 ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggag 24418239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 19118372 - 19118335
Alignment:
Q  104 gcgaaggtgtttctttgcgaattttggatcggagatta 141  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  19118372 gcgaaggtgtttctttgcgaatttgggatcggaaatta 19118335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 20305211 - 20305097
Alignment:
Q  97 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 196  Q
    |||| ||||||||||| ||||| |||||||| ||||||| ||||| | |||| ||||| |||   ||||| |||||||| | |||   ||| | ||| ||    
T  20305211 ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaag 20305112  T
Q  197 tctgcatagaatttc 211  Q
    |||||||||||||||    
T  20305111 tctgcatagaatttc 20305097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 20309615 - 20309501
Alignment:
Q  97 ttgagaagcgaaggtgtttctttgcgaattttggatcggagattaaataattaaaggagttgttgagacagcgaagttgaaggagatgctttacgggtag 196  Q
    |||| ||||||||||| ||||| |||||||| ||||||| ||||| | |||| ||||| |||   ||||| |||||||| | |||   ||| | ||| ||    
T  20309615 ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaagagtaacttaatgggaag 20309516  T
Q  197 tctgcatagaatttc 211  Q
    |||||||||||||||    
T  20309515 tctgcatagaatttc 20309501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University