View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_low_15 (Length: 281)

Name: NF4185_low_15
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_low_15
NF4185_low_15
[»] chr3 (5 HSPs)
chr3 (1-262)||(42794107-42794368)
chr3 (1-262)||(46428177-46428438)
chr3 (1-262)||(54812565-54812826)
chr3 (1-218)||(43912569-43912791)
chr3 (15-88)||(54346530-54346603)
[»] chr1 (5 HSPs)
chr1 (1-259)||(22065518-22065777)
chr1 (15-88)||(23085242-23085315)
chr1 (15-88)||(5308437-5308510)
chr1 (15-88)||(23949493-23949566)
chr1 (15-88)||(50952899-50952972)
[»] chr6 (1 HSPs)
chr6 (4-262)||(1223282-1223539)
[»] chr7 (7 HSPs)
chr7 (6-259)||(24473072-24473325)
chr7 (17-103)||(24472654-24472740)
chr7 (15-146)||(29214059-29214190)
chr7 (15-95)||(28395677-28395757)
chr7 (15-88)||(25713261-25713334)
chr7 (15-88)||(8020075-8020148)
chr7 (15-88)||(48618729-48618802)
[»] chr8 (3 HSPs)
chr8 (1-259)||(44145343-44145587)
chr8 (20-78)||(38560904-38560962)
chr8 (18-88)||(1635793-1635863)
[»] chr4 (2 HSPs)
chr4 (1-212)||(47597907-47598118)
chr4 (15-89)||(34390136-34390210)
[»] chr5 (3 HSPs)
chr5 (1-263)||(18883000-18883262)
chr5 (7-139)||(4560637-4560769)
chr5 (15-146)||(34081069-34081200)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-82)||(355705-355780)
[»] chr2 (2 HSPs)
chr2 (15-67)||(7305413-7305465)
chr2 (14-146)||(40196717-40196849)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 42794368 - 42794107
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42794368 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtgcgtcac 42794269  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794268 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 42794169  T
Q  201 tcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794168 tcaaatatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 42794107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 46428438 - 46428177
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  46428438 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgattcaaccttcctgaggtcgtttccatcctatgtagatagtgtctgtcac 46428339  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428338 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 46428239  T
Q  201 tcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 262  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46428238 tcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggtctg 46428177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 54812565 - 54812826
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54812565 aaccggaaatatgacccatatccttgcaggcaccgtcgccgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaa 54812664  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812665 cttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 54812764  T
Q  201 tcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 262  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54812765 tcaaagatagtcttgttcctccatttccacaaatatcaacacgtagtcataaaggtggtctg 54812826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43912569 - 43912791
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagt-----gtcc 95  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||    
T  43912569 aaccgaaaatatgacccatatccttgcaggcatcgtcactgttgagcttgatccaacctttctgaggtcgtttccatcctatgtagatagtattacttcc 43912668  T
Q  96 gtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaat 195  Q
     ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||| ||| |||||| |||||    
T  43912669 ttcaccttaggccctctatgaaggtactccaagttgtagtcttcaatatccctaacgaatctttggattaatatatttagattgttcagcctttagaaat 43912768  T
Q  196 ccgcttcaaagatagtcttgttc 218  Q
    |  ||||||||||||| ||||||    
T  43912769 caacttcaaagatagttttgttc 43912791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 54346603 - 54346530
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||    
T  54346603 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 54346530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 22065518 - 22065777
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22065518 aaccgaaaatatgacccatatccttgcaggcaccgtcactgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgttcgtcac 22065617  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtata-tttggattattcggcctttggaaatccgc 199  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22065618 cttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatattttggattattcggcctttggaaatccgc 22065717  T
Q  200 ttcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22065718 ttcaaagatagtcttgttcctccatttccacaaataccaacacatagtcataaaggtggt 22065777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 23085242 - 23085315
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| |||||    
T  23085242 cccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat 23085315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 5308510 - 5308437
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||    
T  5308510 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 5308437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 23949566 - 23949493
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||    
T  23949566 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 23949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 50952899 - 50952972
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||    
T  50952899 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 50952972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 1223282 - 1223539
Alignment:
Q  4 cggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcacctt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  1223282 cggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtctgtaacctt 1223381  T
Q  104 aggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgcttca 203  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1223382 aggccctctatgaaagagctccaggttgtagtcttcaatatctctaacaaatgtttgg-ttagtatatttggattattcggcctttggaaatccgcttca 1223480  T
Q  204 aagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223481 aagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctg 1223539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 24473325 - 24473072
Alignment:
Q  6 gaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttag 105  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||    
T  24473325 gaaatatgacccatatccttgcaggcatcgtcgctgttgagcttgatccaactatcctgaggttgtttccatcctatgtagataatgtccgtcaccttag 24473226  T
Q  106 gccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgcttcaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473225 gccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgcttcaaa 24473126  T
Q  206 gatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggt 259  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473125 tatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggt 24473072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 24472654 - 24472740
Alignment:
Q  17 catatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcacctt 103  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||    
T  24472654 catatccttgcaggcaccgtcgctgttgagcttgatccaactatcctgaggttgtttccatcctatgtagataatgtccgtcacctt 24472740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 29214059 - 29214190
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctctat 114  Q
    ||||||| |||||| ||||| || || |||||||||||||||||||| ||||  || ||||| ||||| |||||| | ||| ||| ||| || ||  |||    
T  29214059 cccatattcttgcaagcaccatcactattgagcttgatccaaccttcatgagaccgcttccaacctatatagataatttccttcaactttggaccaatat 29214158  T
Q  115 gaaagtgctccaagttgtagtcttcaatatct 146  Q
    |||| |||||||| ||  ||||||||||||||    
T  29214159 gaaaatgctccaaattacagtcttcaatatct 29214190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 28395677 - 28395757
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtcc 95  Q
    |||||||||||||| || || || || |||||||||||||||||||| || ||| | ||||||| |||||||||| |||||    
T  28395677 cccatatccttgcatgcgccatcactattgagcttgatccaaccttcttgtggttgcttccatcatatgtagataatgtcc 28395757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 25713334 - 25713261
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    ||||| |||||||| ||| | || ||||||||||||||||||||||| ||||| || ||||| ||||| |||||    
T  25713334 cccatgtccttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaacctatatagat 25713261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 8020075 - 8020148
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||    
T  8020075 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagat 8020148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 48618802 - 48618729
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    |||||| ||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| |||||    
T  48618802 cccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat 48618729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 44145587 - 44145343
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145587 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 44145488  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||    
T  44145487 cttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttgg--------------attattcggcctttggaaatccgct 44145402  T
Q  201 tcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggt 259  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44145401 tcaaagatagtcttgttcctccatttccacaaataacaacacgtagtcataaaggtggt 44145343  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38560904 - 38560962
Alignment:
Q  20 atccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc 78  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| |||||    
T  38560904 atccttgcaggcaccgtcactgctgagtttgatccaaccttcctgaggttgttaccatc 38560962  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 1635863 - 1635793
Alignment:
Q  18 atatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat 88  Q
    ||||||||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||||| |||||    
T  1635863 atatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttccaacctatatagat 1635793  T

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Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 47597907 - 47598118
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  47597907 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagtttgatccaaccttcttgaggtcgtttccatcctatgtagataatgtctgtcac 47598006  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47598007 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 47598106  T
Q  201 tcaaagatagtc 212  Q
    ||||||||||||    
T  47598107 tcaaagatagtc 47598118  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 34390136 - 34390210
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagata 89  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| ||||||    
T  34390136 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagata 34390210  T

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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 18883262 - 18883000
Alignment:
Q  1 aaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcac 100  Q
    |||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  18883262 aaccggaaatatgacctagatccttggaggcaccgtcgttgttgagcttgatccaaccttcctgaggtcgtttccatcctatgaagatagtctccttcac 18883163  T
Q  101 cttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttggattattcggcctttggaaatccgct 200  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||| | | || || ||||||||||||||| |||||||||||||| | |    
T  18883162 cttaggccctatatgaaggtgctccaagttttagtcttcaatatctttaacgaatctctagactaatatatttggattatttggcctttggaaatcaggt 18883063  T
Q  201 tcaaagatagtcttgttcctccatttccacaaataccaacacgtagtcataaaggtggtctgt 263  Q
    | ||||||||| |||||| ||||||||||||||||| |  || ||||||| ||||||||||||    
T  18883062 ttaaagatagttttgttcttccatttccacaaatactagtacatagtcatgaaggtggtctgt 18883000  T

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Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 4560637 - 4560769
Alignment:
Q  7 aaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttagg 106  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4560637 aaatatgacccatatccttgcaggcaccatcgctgtcgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgccaccttagg 4560736  T
Q  107 ccctctatgaaagtgctccaagttgtagtcttc 139  Q
    |||| ||||||||||||||||||||||||||||    
T  4560737 ccctttatgaaagtgctccaagttgtagtcttc 4560769  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 34081069 - 34081200
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctctat 114  Q
    |||||||||||||| ||||| || || || |||||||||||||||||  |||| || ||||| ||||| |||||  | ||| ||| ||| || ||  |||    
T  34081069 cccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttccaacctatatagatgatttccttcaactttggaccaatat 34081168  T
Q  115 gaaagtgctccaagttgtagtcttcaatatct 146  Q
    |||  |||||||||||  | ||||||||||||    
T  34081169 gaatatgctccaagttacaatcttcaatatct 34081200  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 355780 - 355705
Alignment:
Q  7 aaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctat 82  Q
    ||||||||||| |||||||||| ||||| ||  |||||||||||||| ||||||| || ||| | || ||||||||    
T  355780 aaatatgacccctatccttgcatgcaccatcattgttgagcttgatcgaaccttcttgtggttgctttcatcctat 355705  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 7305413 - 7305465
Alignment:
Q  15 cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgagg 67  Q
    |||||||||||||| ||||| || || || ||||||||||||||||| |||||    
T  7305413 cccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgagg 7305465  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 40196717 - 40196849
Alignment:
Q  14 acccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctcta 113  Q
    |||||||| |||||| |||||  |  ||||||||||||||||||||||  |||| || ||||| ||||| |||||  ||||  ||| ||| || ||  ||    
T  40196717 acccatattcttgcaagcaccaccattgttgagcttgatccaaccttctcgaggccgcttccaacctatatagatgatgtctttcaactttggaccaata 40196816  T
Q  114 tgaaagtgctccaagttgtagtcttcaatatct 146  Q
    ||||  |||||||||||  | ||||||||||||    
T  40196817 tgaagatgctccaagttacattcttcaatatct 40196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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