View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_low_17 (Length: 237)
Name: NF4185_low_17
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 4419638 - 4419411
Alignment:
| Q |
10 |
catcatcatgtgatgacttataaaacttgtttagagatggtagcaatctaagataacgagtaaggatgaaggagaaattaataataattttatgagatgt |
109 |
Q |
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| T |
4419638 |
catcatcatgtgatgacttataaaacttttttagagatggtagcaatctaagataacgagtaaggatgaaggagaaattaataataattttatgagatgt |
4419539 |
T |
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| Q |
110 |
gtaaggagaaatttctgaaggtttttctttgacaaaatattgatgaggttagtgtaaggaatatatattgcatgtatttgtatttgtacattgtattgga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4419538 |
gtaaggagaaatttctgaaggtttttctttgacaaaatattgatgaggttagtgtaaggaatatatattgcatgtatttgtatttgtacattgtattgga |
4419439 |
T |
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| Q |
210 |
atatttcgaaaacatgcataattatatt |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4419438 |
atatttcgaaaacatgcataattatatt |
4419411 |
T |
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