View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_low_18 (Length: 214)
Name: NF4185_low_18
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 25659353 - 25659485
Alignment:
| Q |
49 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
148 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25659353 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25659452 |
T |
|
| Q |
149 |
atatagatttttctccactttatcatagtatat |
181 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25659453 |
atatagatttttctccactttatcatagtatat |
25659485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 25665758 - 25665890
Alignment:
| Q |
49 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
148 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25665758 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25665857 |
T |
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| Q |
149 |
atatagatttttctccactttatcatagtatat |
181 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
25665858 |
atatagatttttctccactttatcatagtatat |
25665890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 25672163 - 25672295
Alignment:
| Q |
49 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
148 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25672163 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaaataatgtattatgtgatattctttatttttggaata |
25672262 |
T |
|
| Q |
149 |
atatagatttttctccactttatcatagtatat |
181 |
Q |
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|
||||||||||||||||||||||||||||||||| |
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|
| T |
25672263 |
atatagatttttctccactttatcatagtatat |
25672295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 25678568 - 25678710
Alignment:
| Q |
49 |
ctccaaaaaacaatttatcattgaaaatcgaatgcaatatgtattcttcaatgttctttaaaaaagaatgtattatgtgatattctttattttttgaata |
148 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
25678568 |
ctccaaaaaataatttatcattgaaaatcgaatgaaatatgtattcttcaatattctttaaaaagtaatgtattatgtgatattctttatttttggaata |
25678667 |
T |
|
| Q |
149 |
atatagatttttctccactttatcatagtatatcattaaaact |
191 |
Q |
| |
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||||||||||||||||||||||||||| |||||| || ||||| |
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| T |
25678668 |
atatagatttttctccactttatcataatatatctttgaaact |
25678710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25659195 - 25659226
Alignment:
| Q |
18 |
aatctagaccgagagatgtgcctatatttagc |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
25659195 |
aatctagaccgagagatgtgcctatatttagc |
25659226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25665600 - 25665631
Alignment:
| Q |
18 |
aatctagaccgagagatgtgcctatatttagc |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25665600 |
aatctagaccgagagatgtgcctatatttagc |
25665631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25672005 - 25672036
Alignment:
| Q |
18 |
aatctagaccgagagatgtgcctatatttagc |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
25672005 |
aatctagaccgagagatgtgcctatatttagc |
25672036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25678410 - 25678441
Alignment:
| Q |
18 |
aatctagaccgagagatgtgcctatatttagc |
49 |
Q |
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|
|||||||||||||||||||||||||||||||| |
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|
| T |
25678410 |
aatctagaccgagagatgtgcctatatttagc |
25678441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25685090 - 25685121
Alignment:
| Q |
18 |
aatctagaccgagagatgtgcctatatttagc |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25685090 |
aatctagaccgagagatgtgcctatatttagc |
25685121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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