View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_low_2 (Length: 649)
Name: NF4185_low_2
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 645
Target Start/End: Original strand, 19577939 - 19578564
Alignment:
| Q |
18 |
cataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttact |
117 |
Q |
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| T |
19577939 |
cataccatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgacagttttcacggcgcggatggtaacgtttact |
19578038 |
T |
|
| Q |
118 |
atggttttgctactcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgt |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578039 |
atggttttgctactcggaacgggttgtctgtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgt |
19578138 |
T |
|
| Q |
218 |
gcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578139 |
gcatgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaa |
19578238 |
T |
|
| Q |
318 |
gttatggagagttttcctttgatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578239 |
gttatggagagttttcctttgatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaat |
19578338 |
T |
|
| Q |
418 |
ttattagtatatatgttttctatttgtgtgcttgtttaatttgtttgctaactttatgtatatatatatctgtttaatttgtgccaaaacgatacgatgg |
517 |
Q |
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| T |
19578339 |
ttattagtatatatgttttctatttgtgtgcttgtttaatttgtttgctaactttatg--tatatatatctgtttaatttgtgacaaaacgatacaatgg |
19578436 |
T |
|
| Q |
518 |
ctgtgtaattttataaatattgattggagcaaatttagttcagttttttcacaatctttctgagtctataacaattgaatatgcgtagtactggttgcag |
617 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19578437 |
ctgtgtaattttataaatattgattcgagcaaatttagttcagttttttcacaatctttctgagtctataacaattgaatatgcgtagcactggttgcag |
19578536 |
T |
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| Q |
618 |
tttgtggtatttcaatttcatctcactc |
645 |
Q |
| |
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||||||||||||||||||||| |||||| |
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| T |
19578537 |
tttgtggtatttcaatttcatatcactc |
19578564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 429
Target Start/End: Complemental strand, 2787652 - 2787244
Alignment:
| Q |
21 |
accatcatgatccatttcctcttaatcatgtgtgcactctcttgtttcttctttcactttaccgatagttttcacggcgcggatggtaacgtttactatg |
120 |
Q |
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|||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
2787652 |
accatcatgatccatttccttttaattatatgtgcactctcttgtttcttttttcactttacagatagttttcacggcgctgatggtaatgtttactatg |
2787553 |
T |
|
| Q |
121 |
gttttgctactcggaacgggttgtcggtttttaaaccgggactcactgttttggttcctaatgatgacaagtacaaagttgggtttcaagatttcgtgca |
220 |
Q |
| |
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|||||| ||| | ||| ||||| || ||||||||||| ||||| |||||||||||||||| || ||||| ||||| || |||||||||||||| || || |
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| T |
2787552 |
gttttgttaccccgaaagggttatccgtttttaaaccaggacttgctgttttggttcctaacgacgacaaatacaaggtagggtttcaagattttgttca |
2787453 |
T |
|
| Q |
221 |
tgcggttatgtcggttatggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagtt |
320 |
Q |
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||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||| || |||||||||||| |
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| T |
2787452 |
tgcagttatgtcagttatggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagtt |
2787353 |
T |
|
| Q |
321 |
atggagagttttcctttgatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaattta |
420 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||| |
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| T |
2787352 |
atggagagttttccattgatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaatttt |
2787253 |
T |
|
| Q |
421 |
ttagtatat |
429 |
Q |
| |
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||||||||| |
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|
| T |
2787252 |
ttagtatat |
2787244 |
T |
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