View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_low_5 (Length: 486)
Name: NF4185_low_5
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 161903 - 161574
Alignment:
| Q |
16 |
cagaatcaaggtgtcctgtaatgtatacacagaatacctacaagtaggaaattaatgtagacataaaactcagtttaggcatactgtttacatagactag |
115 |
Q |
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| T |
161903 |
cagaatcaaggtgtcctgtaatgtatacacagaaaacctacaagtaggaaattaatgtagacataaaactcagtttaggcatactgtttacatagactag |
161804 |
T |
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| Q |
116 |
gtaaactcattaaaactctgtttacatctttcaacaaggagatctaatcactcttctccggtttgttctgtgtcttgggcaatttgttctgccagattca |
215 |
Q |
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| T |
161803 |
gtaaactcattaaa-ctatgtttacatctttcaacaaggagatctaatcactcttctccggttt---------------------gttctgccagattca |
161726 |
T |
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| Q |
216 |
tgaatgaggaggcttctctgttgataattgttgcattaatggttatctctcaacatatgtaatgatttattactccttctttcttcttctgaagtacatg |
315 |
Q |
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| T |
161725 |
tgaatgaggaggcttctctgttgataattgttgcattaatggttatctctcaacatatgtaatgatttattactccttctttc---ttctgaagtacatg |
161629 |
T |
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| Q |
316 |
agaaactagcattgatttactctactgatggtatgggttttatagacaaactatc |
370 |
Q |
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| T |
161628 |
agaaactagcattgatttactctattgatggtatgggttttatagacaaactatc |
161574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 366 - 468
Target Start/End: Complemental strand, 161549 - 161447
Alignment:
| Q |
366 |
ctatctaatgtgttgtgtggaggttggaactttgcttcatgccattcgagattgtattcatgctaatttgttgtttttatattcatgttgtctttttggg |
465 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
161549 |
ctatctaatgtgttgtgtggaggttagaactttgcttcatgccattcgagactgtattcatgctaatttgttgtttttatattgatgttgtctttttggg |
161450 |
T |
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| Q |
466 |
ttt |
468 |
Q |
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| T |
161449 |
ttt |
161447 |
T |
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