View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4185_low_6 (Length: 438)
Name: NF4185_low_6
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4185_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 1430793 - 1431198
Alignment:
| Q |
19 |
ctagttcctgaccgttttctgccataaccacgcttgccagaacataatgctctaaagcactttcataatcaccttttgagtcacagattagtcccatcaa |
118 |
Q |
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| T |
1430793 |
ctagttcctgaccgttttctgccataaccacgcttgccagaacataatgctctaaagcactttcataatcaccttttgagtcacagattagtcccatcaa |
1430892 |
T |
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| Q |
119 |
tctccgatcagctgcttcttcaaacgatgcaggcaaaccatttcccttatgaatatcaagagccatttgacacagcttcttcgcttcatcaaattgtagg |
218 |
Q |
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| T |
1430893 |
tctccgatcagctgcttcttcaaacgatgcaggcaaaccatttcccttatgaatatcaagagccatttgacacagcttcttcgcttcatcaaattgtagg |
1430992 |
T |
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| Q |
219 |
gcttgaacatgtgcttcggctacataccgacatgtctcaccgaatcgaggatcggtttcccctaggacctgcccttgaatttcaagacctgctgtataaa |
318 |
Q |
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| T |
1430993 |
gcttgaacatgtgcttcggctacataccgacatgtctcaccgaatcgaggatcggtttcccctaggacctgcccttgaatttcaagacctgctgtataaa |
1431092 |
T |
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| Q |
319 |
acagtagagaattctcaatatttcccatcattgcataagtatcacctaattgcatacaccctgcaaacttagctagtgcatgatcttgaccatcctctaa |
418 |
Q |
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| T |
1431093 |
acagtagagaattctcaatatttcccatcattgcataagtatcacctaattgcatacaccctgcaaacttagctagtgcatgatcttgaccatcctctaa |
1431192 |
T |
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| Q |
419 |
cacagg |
424 |
Q |
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| T |
1431193 |
cacagg |
1431198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 1250714 - 1250630
Alignment:
| Q |
328 |
aattctcaatatttcccatcattgcataagtatcacctaattgcatacaccctgcaaacttagctagtgcatgatcttgaccatc |
412 |
Q |
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| T |
1250714 |
aattctcgatatttcccatcattgtataagtgtcatgtaatttcacgcaccatgcaaacttagcttgtgcatgatcttgaccatc |
1250630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 1250810 - 1250721
Alignment:
| Q |
219 |
gcttgaacatgtgcttcggctacataccgacatgtctcaccgaatcgaggatcggtttcccctaggacctgcccttgaatttcaagacct |
308 |
Q |
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| T |
1250810 |
gcttgaacatgtgcctcagctacgtgcatacatgtctcaccgaatctaggatcagtttcccccaagtcctgacctggaatttcaagtcct |
1250721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43926838 - 43926886
Alignment:
| Q |
166 |
tatgaatatcaagagccatttgacacagcttcttcgcttcatcaaattg |
214 |
Q |
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| T |
43926838 |
tatgaatatcaagagcaatttgacacagcctctcagcctcatcaaattg |
43926886 |
T |
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