View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4185_low_9 (Length: 367)

Name: NF4185_low_9
Description: NF4185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4185_low_9
NF4185_low_9
[»] chr8 (5 HSPs)
chr8 (33-341)||(35010479-35010786)
chr8 (228-278)||(37246305-37246355)
chr8 (222-271)||(27696377-27696426)
chr8 (222-283)||(43596968-43597029)
chr8 (222-278)||(40953370-40953426)
[»] chr4 (7 HSPs)
chr4 (222-297)||(5787265-5787340)
chr4 (222-297)||(34513967-34514042)
chr4 (222-277)||(28115890-28115945)
chr4 (222-297)||(34513718-34513793)
chr4 (223-282)||(44290133-44290192)
chr4 (222-297)||(45499141-45499216)
chr4 (222-283)||(3767872-3767933)
[»] chr6 (6 HSPs)
chr6 (224-314)||(9314912-9315002)
chr6 (222-281)||(29979364-29979423)
chr6 (225-278)||(391236-391289)
chr6 (228-276)||(23404630-23404678)
chr6 (222-289)||(10789387-10789454)
chr6 (222-283)||(12255247-12255308)
[»] chr5 (4 HSPs)
chr5 (228-341)||(29860945-29861059)
chr5 (225-298)||(7883742-7883815)
chr5 (222-297)||(33007960-33008035)
chr5 (222-277)||(33134228-33134283)
[»] chr1 (4 HSPs)
chr1 (222-297)||(28622877-28622952)
chr1 (222-272)||(49549660-49549710)
chr1 (223-280)||(19910141-19910198)
chr1 (222-283)||(37346976-37347037)
[»] chr3 (2 HSPs)
chr3 (222-283)||(28457748-28457809)
chr3 (225-283)||(21748362-21748420)
[»] chr2 (2 HSPs)
chr2 (223-297)||(13349466-13349540)
chr2 (223-283)||(27338846-27338906)
[»] chr7 (1 HSPs)
chr7 (248-297)||(34703157-34703206)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 341
Target Start/End: Original strand, 35010479 - 35010786
Alignment:
Q  33 tatttaccatatcgaatatatttgaatnnnnnnnnctaacttttaataaatattaattaatattatagacatacgtgtagtgtggtgatgttgtaaaact 132  Q
    ||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35010479 tatttaccatatcgaatatatttgaa--aaaaaaactaactttttataaatattaattaatattatagacatacgtgtagtgtggtgatgttgtaaaact 35010576  T
Q  133 atcagacaagcaccatttataaatacctttcgttttcaatattaattttatttactttgtc--nnnnnnnnntattaatttttatttatggcaatatttt 230  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||           |||||||||||||||||||| |||||||    
T  35010577 atcagataagcaccatttataaatatttttcattttcaatattaattttatttactttgtcaaaaaaaaaaatattaatttttatttatggc-atatttt 35010675  T
Q  231 aaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacaggtataatttacggagga 330  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||    
T  35010676 aaaaatggtgaaatagcaagataataaataaggaatgatcttttaatctcatcgggatagtttctaatttagccaatactcaggtataaattacagacga 35010775  T
Q  331 aagtaatgata 341  Q
    |||||||||||    
T  35010776 aagtaatgata 35010786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 37246355 - 37246305
Alignment:
Q  228 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 278  Q
    ||||||||||||  |||| |||||||||||||||||||| ||||| |||||    
T  37246355 tttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatc 37246305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 27696426 - 27696377
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatct 271  Q
    |||||||||||||||| |  |||| |||||||||||||||||||| ||||    
T  27696426 caatattttaaaaatgacagaatatcaagataataaataaggaatgatct 27696377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 43597029 - 43596968
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    ||||||||||||||||||  ||||  ||||| ||||||||||| | ||||| ||||||||||    
T  43597029 caatattttaaaaatggcagaatataaagattataaataaggagtgatcttctaatctcatc 43596968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 40953426 - 40953370
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 278  Q
    |||||||||||||| |||  |||| |||| ||||||||||||||| ||||| |||||    
T  40953426 caatattttaaaaagggcagaatatcaaggtaataaataaggaatgatcttctaatc 40953370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 5787265 - 5787340
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||| |||| | ||| |||||||    
T  5787265 caatattttaaaaatggcagaatatcaagataataaataaggaatgatcttttaatcccatcaggataatttctaa 5787340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 34514042 - 34513967
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||||||||||  |||| |||||||||||||||| ||| ||||| ||||||| || | ||| |||||||    
T  34514042 caatattttaaaaatggcagaatatcaagataataaataagaaatgatcttctaatctcgtccggataatttctaa 34513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 28115890 - 28115945
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaat 277  Q
    |||||||||||||||||| ||||  ||||||||||||||| |||| ||||| ||||    
T  28115890 caatattttaaaaatggcaaaatctcaagataataaataaagaatgatcttctaat 28115945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 34513718 - 34513793
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||||||||||  |||| |||||||||||||||| ||| || || ||||| |||| | ||| |||||||    
T  34513718 caatattttaaaaatggcagaatatcaagataataaataagaaatgattttctaatcccatcaggataatttctaa 34513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 44290133 - 44290192
Alignment:
Q  223 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcat 282  Q
    |||||||||||||||||  |||| |||||||||||||||  ||| ||||| |||||||||    
T  44290133 aatattttaaaaatggcagaatatcaagataataaataattaatgatcttctaatctcat 44290192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 45499141 - 45499216
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||| ||||||||  |||| ||||||||||||||| |||| ||||| ||||| ||||   |||||||||||    
T  45499141 caatattttcaaaatggcagaatatcaagataataaataaagaatgatcttctaatcccatcatgatagtttctaa 45499216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 3767933 - 3767872
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    |||||||||||||||  |  |||| |||||||||||||||||||| || || ||||||||||    
T  3767933 caatattttaaaaataacagaatatcaagataataaataaggaatgatattctaatctcatc 3767872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 9315002 - 9314912
Alignment:
Q  224 atattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacagg 314  Q
    ||||||||||||||||  |||| |||||||||||||||||||| ||||| |||||||| | | ||| ||||||||| |||| |||| ||||    
T  9315002 atattttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatctcaccaggataatttctaattcagcctatactcagg 9314912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 29979364 - 29979423
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctca 281  Q
    |||||||||||||||||   |||| |||||||||||||||||||| ||||||||||||||    
T  29979364 caatattttaaaaatggtagaatatcaagataataaataaggaatgatcttttaatctca 29979423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 391236 - 391289
Alignment:
Q  225 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatc 278  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||    
T  391236 tattttaaaaatggcaaaatatcaagataataaataaggaatgatcttctaatc 391289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 23404678 - 23404630
Alignment:
Q  228 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaa 276  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||||||||    
T  23404678 tttaaaaatggcagaatatcaagataataaattaggaataatcttttaa 23404630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 10789387 - 10789454
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaata 289  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||| || || ||||| |||| |||||    
T  10789387 caatattttaaaaatagcagaatatcaagataataaataaggaatgatattataatcccatcagaata 10789454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 12255308 - 12255247
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    |||||||||||||| | |  |||| |||||||||||||||||||| ||||| ||||| ||||    
T  12255308 caatattttaaaaaggacagaatatcaagataataaataaggaattatcttctaatcccatc 12255247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 29861059 - 29860945
Alignment:
Q  228 tttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaatttagccaatacacagg-tataatttacgg 326  Q
    ||||||||||||  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| ||||||| |||||| |||| |||| ||||| ||||      
T  29861059 tttaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaacttagcctatactcaggatataaattacaa 29860960  T
Q  327 aggaaagtaatgata 341  Q
    |||||||| ||||||    
T  29860959 aggaaagtcatgata 29860945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 7883742 - 7883815
Alignment:
Q  225 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaat 298  Q
    |||||||||||||||  ||||  ||||||||||||||||||| ||||| ||||| |||| | ||| ||||||||    
T  7883742 tattttaaaaatggcagaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaat 7883815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 33007960 - 33008035
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||| |||| |  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| |||||||    
T  33007960 caatattttaataatgacagaatatcaagataataaataaggaatgatcttctaatcccatcaggataatttctaa 33008035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 33134283 - 33134228
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaat 277  Q
    |||||||||||||||| |  |||| |||||||||||||||||||| ||||| ||||    
T  33134283 caatattttaaaaatgacagaatatcaagataataaataaggaatgatcttctaat 33134228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 28622877 - 28622952
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||| ||||| |||||||||| | ||| |||||||    
T  28622877 caatattttaaaaatcgcagaatatcaagataataaataaggaatgatcttctaatctcatcaggataatttctaa 28622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 49549710 - 49549660
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatctt 272  Q
    ||||||||||||||||||  |||| |||||||||||||||||||| |||||    
T  49549710 caatattttaaaaatggcagaatatcaagataataaataaggaatgatctt 49549660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 19910198 - 19910141
Alignment:
Q  223 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctc 280  Q
    |||||||||||||| || ||||| ||||||||| ||||||| || ||||| |||||||    
T  19910198 aatattttaaaaattgcaaaatatcaagataattaataaggcatgatcttctaatctc 19910141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 37346976 - 37347037
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    ||||||||| ||||||||  |||| || ||||||||||||||||| ||||| ||||| ||||    
T  37346976 caatatttttaaaatggcagaatatcaggataataaataaggaatgatcttctaatcccatc 37347037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 28457748 - 28457809
Alignment:
Q  222 caatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    |||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||| ||||    
T  28457748 caatattttaaaaatggcaatatatcaagataataaataaggaatgatcttctaatcccatc 28457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 21748362 - 21748420
Alignment:
Q  225 tattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    |||||||||||||||  |||| ||||||||||||||||||||  |||| ||||||||||    
T  21748362 tattttaaaaatggcagaatatcaagataataaataaggaatggtcttctaatctcatc 21748420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 13349466 - 13349540
Alignment:
Q  223 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||| |||||||||  |||| |||||||||||||||||||| ||||| ||||| |||| | ||| |||||||    
T  13349466 aatatttaaaaaatggcagaatatcaagataataaataaggaatgatcttctaatcgcatcaggataatttctaa 13349540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 27338906 - 27338846
Alignment:
Q  223 aatattttaaaaatggcgaaatagcaagataataaataaggaataatcttttaatctcatc 283  Q
    ||||||||||||||| |  |||| |||||||||||||||||||| || || ||||| ||||    
T  27338906 aatattttaaaaatgacagaatatcaagataataaataaggaatgatattataatcccatc 27338846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 34703206 - 34703157
Alignment:
Q  248 aagataataaataaggaataatcttttaatctcatcggaatagtttctaa 297  Q
    ||||||||||||||||||| ||||| ||||| |||| | |||||||||||    
T  34703206 aagataataaataaggaatgatcttctaatcccatcaggatagtttctaa 34703157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University