View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4186_high_1 (Length: 726)

Name: NF4186_high_1
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4186_high_1
NF4186_high_1
[»] chr3 (7 HSPs)
chr3 (14-493)||(13797246-13797739)
chr3 (597-709)||(13797054-13797166)
chr3 (115-212)||(30435023-30435120)
chr3 (364-429)||(30435290-30435355)
chr3 (506-541)||(13797222-13797257)
chr3 (365-409)||(25132343-25132387)
chr3 (365-455)||(17620288-17620377)
[»] chr2 (9 HSPs)
chr2 (154-448)||(45272514-45272821)
chr2 (21-187)||(34668006-34668169)
chr2 (89-194)||(18714534-18714639)
chr2 (22-235)||(43689290-43689504)
chr2 (58-150)||(37049055-37049147)
chr2 (14-118)||(45272394-45272497)
chr2 (365-430)||(18489046-18489111)
chr2 (46-136)||(31071941-31072031)
chr2 (364-426)||(43689086-43689148)
[»] chr1 (3 HSPs)
chr1 (14-289)||(34947942-34948218)
chr1 (67-342)||(10150278-10150554)
chr1 (364-421)||(10150589-10150646)
[»] chr5 (4 HSPs)
chr5 (14-283)||(17318339-17318609)
chr5 (21-190)||(22437099-22437268)
chr5 (29-206)||(39430654-39430831)
chr5 (365-447)||(17318704-17318785)
[»] chr7 (2 HSPs)
chr7 (604-689)||(9717617-9717702)
chr7 (365-430)||(5865345-5865410)
[»] chr4 (3 HSPs)
chr4 (604-689)||(13583884-13583969)
chr4 (46-136)||(10392801-10392891)
chr4 (365-455)||(28713130-28713220)
[»] chr8 (2 HSPs)
chr8 (373-409)||(12340814-12340850)
chr8 (365-455)||(33694848-33694938)
[»] chr6 (2 HSPs)
chr6 (14-70)||(2365359-2365415)
chr6 (151-212)||(26586223-26586284)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 493
Target Start/End: Complemental strand, 13797739 - 13797246
Alignment:
Q  14 agaccctaatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttac 113  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  13797739 agaccctaatccaatcacaaactaaatgccataactctctgaatatggtacaagagaagaataaatgttgcgccgtttccacttttccgcacccagtcac 13797640  T
Q  114 gcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacaccttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13797639 gcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacaccttt 13797540  T
Q  214 accag-acatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgactgtcatctgttgtgagcatctaataaacattgcgaacagagtaaccgc 312  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  13797539 accagaacatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgactgtcatctgttgtgagcatctgataaacattgtgaacagagtaaccgc 13797440  T
Q  313 cactaggatcaagctgtcacctccactgattggaggtctggtgttgc-------------atagcaacaacctacactctcctaataactcctcctccca 399  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||    
T  13797439 cactaggatcaagctgtcacctccactgatcggaggtctggtgttgcatagtaacatcagatagcaacaacctacactctcctaataactcctcctccca 13797340  T
Q  400 ctcccacaactgccgcctccactaccacgccgctctccactcctcccaatctaaagcagatatctgcccaaccaaacaaaaagttattgtaaat 493  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13797339 ctcccacaaccgccgcctccactaccacgccgctctccgctcctcccaatctaaagcagacatctgcccaaccaaacaaaaagttattgtaaat 13797246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 597 - 709
Target Start/End: Complemental strand, 13797166 - 13797054
Alignment:
Q  597 gagcatgttagcaaatactactaatgagaaggaagaaacgtagaatagtttaaccacaaataacttggaatgcaagttagagttagtttagaaatgtaat 696  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13797166 gagcatcttagcaaatactactaatgagaaggaagaaacgtagaatagtttaaccacaaataacttggaatgcaagttagagttagtttagaaatgtaat 13797067  T
Q  697 tttagtttaaatt 709  Q
    |||||||||||||    
T  13797066 tttagtttaaatt 13797054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 30435023 - 30435120
Alignment:
Q  115 cacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacacctt 212  Q
    ||||| || |||||| |||||||||||||| ||||| | |||||| | ||||||||||||||| | ||||||||||||||  | | ||||||||||||    
T  30435023 cacatatgcgcctccagagagaggatcccatgagccacaagattcgctttggttggcaacctgatgcggagaagtctccaagcaaaaatagacacctt 30435120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 30435290 - 30435355
Alignment:
Q  364 caacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgc 429  Q
    ||||| ||||||||| ||||| | ||||||||||||||||||||||  ||||||||||| ||||||    
T  30435290 caacagcctacactcccctaacagctcctcctcccactcccacaacctccgcctccactgccacgc 30435355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 541
Target Start/End: Complemental strand, 13797257 - 13797222
Alignment:
Q  506 gttattgtaaataaacttgaagattgatttacatcg 541  Q
    ||||||||||||||||||||||||||||||||||||    
T  13797257 gttattgtaaataaacttgaagattgatttacatcg 13797222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 25132343 - 25132387
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaac 409  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||    
T  25132343 aacaacctacactcccctagtaactcctcctcccacacccacaac 25132387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 17620288 - 17620377
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgccgctctccactcctcccaatctaaag 455  Q
    ||||||||||||||| |||  ||||||| ||||||| ||||||||  || |||||||| ||||||| ||| || ||| |||||| ||||||    
T  17620288 aacaacctacactctgctaccaactccttctcccacgcccacaacctcctcctccacttccacgcctctc-cccctcgtcccaacctaaag 17620377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 154 - 448
Target Start/End: Original strand, 45272514 - 45272821
Alignment:
Q  154 agattctccttggttggcaacctgttacggagaagtctccatacgagaatagacacctttacc-agacatatatgtgccaaatcaaatccgaagttgcgt 252  Q
    |||||| ||||||||||||||||||||||||||||||||||  | ||||||||  |||||||| | |||| | |||||||||||||||| ||| ||||||    
T  45272514 agattcgccttggttggcaacctgttacggagaagtctccaagcaagaatagatgcctttaccaaaacatgtttgtgccaaatcaaatctgaaattgcgt 45272613  T
Q  253 ccaatgtatgactgtcatctgttgtgagcatctaataaacattgcgaacagagtaaccgccactaggatcaagctgtcacctccactgattggaggtctg 352  Q
    |||   |||||||  |||||||||||||||| | |||||||||||  || |||||| | ||||| | |||| |  | || ||||||||||  ||||||||    
T  45272614 ccacaatatgactaccatctgttgtgagcatatgataaacattgcagacggagtaaacaccacttgtatcatgtcgccagctccactgatcagaggtctg 45272713  T
Q  353 gtgttgcatag-------------caacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgccgctctccac 439  Q
        |||| ||             ||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||  ||||||||||| || |    
T  45272714 aacctgcaaagtaacatcaaacaacaacaacctacactctcctaataactcctcctctcactcccacaacctctgcctccacggccacgccgctc-cccc 45272812  T
Q  440 tcctcccaa 448  Q
    |||||||||    
T  45272813 tcctcccaa 45272821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 34668006 - 34668169
Alignment:
Q  21 aatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatc 120  Q
    |||||||| |||||||||||| |||||||||||  ||||| |||| ||||| |||||||| ||| |  ||||||||| |||||||| |||||| ||||||    
T  34668006 aatccaattacgaactaaatgccataactctca--atatgatacaagagaaaaataaatgatgcacgatttccacttctccgcacc-agttacacacatc 34668102  T
Q  121 tgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaa 187  Q
    |||||||| ||||  | ||||||||||||| ||| |||  | ||||||| |||||| ||||||||||    
T  34668103 tgagcctcttgagtaatgatcccacgagccaccatattagctttggttgacaaccttttacggagaa 34668169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 18714534 - 18714639
Alignment:
Q  89 tttccacttttccgcacccagttacgcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaag 188  Q
    |||||||||  ||||| || || || ||||| || |||||||||||||| |||||||||||| | |||||| | ||||||||||||||||| ||||||||    
T  18714534 tttccacttcaccgcagccggtcacacacatttgcgcctcctgagagagaatcccacgagccacaagattcgctttggttggcaacctgttgcggagaag 18714633  T
Q  189 tctcca 194  Q
    ||||||    
T  18714634 tctcca 18714639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 43689504 - 43689290
Alignment:
Q  22 atccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatct 121  Q
    |||||| ||||||  | |||||| |||||| |||| |||||||| || | ||| |||||||| |||||||||||||  ||||||||||  || ||||| |    
T  43689504 atccaaccacgaataagatgtcaaaactcttagaaaatggtacaagaaacgaacaaatgttgtgccgtttccacttcaccgcacccagccacacacattt 43689405  T
Q  122 gagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacacctttaccag-ac 220  Q
    | ||||| ||||||| |||||| ||||||   |||||    ||||| ||||| ||||| ||||| ||||  ||| | || | ||||||||||||||| ||    
T  43689404 gtgcctcatgagagatgatcccgcgagccagaagattagatttggtaggcaatctgttgcggagtagtcgtcatgcaaggagagacacctttaccagaac 43689305  T
Q  221 atatatgtgccaaat 235  Q
    || ||||||||||||    
T  43689304 atgtatgtgccaaat 43689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 37049147 - 37049055
Alignment:
Q  58 atggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatctgagcctcctgagagaggatcccacgagcc 150  Q
    |||||||| || | ||| |||||||||||||||||||| |  | ||||||||| || |||||||||||||||||||||| |||  ||||||||    
T  37049147 atggtacaagaaacgaacaaatgttgcgccgtttccacctcactgcacccagtcacacacatctgagcctcctgagagatgatatcacgagcc 37049055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 45272394 - 45272497
Alignment:
Q  14 agaccctaatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttac 113  Q
    |||||| ||||||||||||||||||||  |||| ||||| ||||||||||||  ||||||||||||| || | | ||||||||| ||| ||||| || ||    
T  45272394 agaccccaatccaatcacgaactaaattccata-ctctctgaatatggtacaatagaagaataaatgatgagtcatttccacttctccacacccggtcac 45272492  T
Q  114 gcaca 118  Q
    |||||    
T  45272493 gcaca 45272497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 18489046 - 18489111
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgcc 430  Q
    ||||||||||||||  ||| ||| |||||||||||| ||||||||  ||||||||||| |||||||    
T  18489046 aacaacctacactcctctactaattcctcctcccacgcccacaacctccgcctccactgccacgcc 18489111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 31072031 - 31071941
Alignment:
Q  46 aactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatctgagcctcctgagaga 136  Q
    ||||||| ||| |||| ||||||   ||| || ||||||||||||||||||| | |||||||||| |  ||||| |||||||| |||||||    
T  31072031 aactctcggaaaatggaacacgaacggaacaagtgttgcgccgtttccacttcttcgcacccagtcatacacatatgagcctcatgagaga 31071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 426
Target Start/End: Complemental strand, 43689148 - 43689086
Alignment:
Q  364 caacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactacca 426  Q
    ||||||||||||||| | ||| | ||||||||||||||||||||||  ||||| |||| ||||    
T  43689148 caacaacctacactcccgtaacatctcctcctcccactcccacaacctccgccgccaccacca 43689086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 34948218 - 34947942
Alignment:
Q  14 agaccctaatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttac 113  Q
    |||||| ||| ||||||||||| | |||||||||||||| ||| ||||| || || | |||||||||||| |  |||||||||| ||  ||||| || ||    
T  34948218 agaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaatgaataaatgttgagttgtttccacttctcaacacccggtcac 34948119  T
Q  114 gcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacacctt- 212  Q
    ||||||||||  ||||||||| |  |||||| ||||  | |||||| | || ||||| || ||||||| |||||||   || || ||||||||||||||     
T  34948118 gcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctgttacagagaagttgtcaaacaagaatagacaccttg 34948019  T
Q  213 taccagacatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgactgtcatctgttgtgagcatctaata 289  Q
     ||  ||||| | |||||||||||||||||||| |||| ||||  || ||||||||||||||  ||||||| |||||    
T  34948018 aacgggacatgtttgtgccaaatcaaatccgaaattgcatccacagtgtgactgtcatctgtaatgagcatataata 34947942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 67 - 342
Target Start/End: Original strand, 10150278 - 10150554
Alignment:
Q  67 gagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatctgagcctcctgagagaggatcccacgagcccccagattctccttgg 166  Q
    ||||| |||||||||||||  |||||||||| |||||||||||| || ||||| ||||| |||| ||  | |||||||||||||  ||||||  | ||||    
T  10150278 gagaaaaataaatgttgcgttgtttccacttctccgcacccagtcacacacatatgagcttcctaagtaatgatcccacgagccatcagatttactttgg 10150377  T
Q  167 ttggcaacctgttacggagaagtctccatacgagaatagacacctttaccag-acatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgact 265  Q
     | |||||||||| || |||||||||||  | | ||| |||||||||    | ||| || |||||||||||||||| ||||  || || ||  |||||||    
T  10150378 cttgcaacctgttgcgaagaagtctccaagctaaaattgacacctttgttggaacaaatttgtgccaaatcaaatcagaagccgcatcaaaaatatgact 10150477  T
Q  266 gtcatctgttgtgagcatctaataaacattgcgaacagagtaaccgccactaggatcaagctgtcacctccactgat 342  Q
    |||||| || || | ||||||||| |||  ||||||||| ||||| |||| ||||| |||    |||||||||||||    
T  10150478 gtcatcggtcgtcaacatctaatatacaccgcgaacagaataacctccacaaggattaagtctccacctccactgat 10150554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 10150589 - 10150646
Alignment:
Q  364 caacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccac 421  Q
    |||||||| |||||||||||  |||||||| ||||| |||||||||  ||||||||||    
T  10150589 caacaaccaacactctcctagcaactcctcatcccaatcccacaacctccgcctccac 10150646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 17318339 - 17318609
Alignment:
Q  14 agaccctaatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttac 113  Q
    |||||| ||||||| ||||||||| ||   |||| |||| |||||| | ||| ||||| |||||||| |  |  ||||||||||  |||||||| || ||    
T  17318339 agaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatgagaaaaataaatggttagttgtttccacttcaccgcacccggtcac 17318438  T
Q  114 gcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacaccttt 213  Q
     ||||| ||  |||| ||||||| ||||||||||||| | |||||| |  ||||||| || |||||||||||||||||||| || ||||||||||||||     
T  17318439 acacatttgcacctcttgagagatgatcccacgagccacaagattcgctatggttggtaaactgttacggagaagtctccaaacaagaatagacacctta 17318538  T
Q  214 a-ccagacatatatgtgccaaatcaaatccgaagttgcgtccaatgtatgactgtcatctgttgtgagcat 283  Q
    |    ||||| | |||||||||||| |||||||  ||||||||    ||||||| ||| ||||||||||||    
T  17318539 atggggacatgtctgtgccaaatcatatccgaaactgcgtccacaacatgactgacatttgttgtgagcat 17318609  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 22437099 - 22437268
Alignment:
Q  21 aatccaatcacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatc 120  Q
    ||||||||||||||| |  || |||||||||| ||||||||| || || |  ||||||||||| || |||||||||| ||||||||| || || |||||     
T  22437099 aatccaatcacgaacaaggtgccataactctctgaatatggtgcaagaaacaaataaatgttgagctgtttccacttctccgcacccggtgacacacata 22437198  T
Q  121 tgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtc 190  Q
    ||||||||||||||  | ||||||| |||| | |||||| |  | |||||||||||||||| ||||||||    
T  22437199 tgagcctcctgagaaggaatcccacaagccacaagattcgctctagttggcaacctgttacagagaagtc 22437268  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 39430654 - 39430831
Alignment:
Q  29 cacgaactaaatgtcataactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatctgagcctc 128  Q
    |||||||| |||| ||||| |||||||| | | |||| |||||||||||||| || |||||||||||||  |  ||| | || || || |  || |||||    
T  39430654 cacgaactgaatgccataagtctcagaaaacgctacaagagaagaataaatgatgagccgtttccacttcccaacactcggtcacacaaacttgcgcctc 39430753  T
Q  129 ctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacgagaataga 206  Q
    |||||| |  |||||||||||| ||| |||  |||| |||||||||| ||||||||||||||||||| ||||||||||    
T  39430754 ctgagaaataatcccacgagccaccaaatttgccttagttggcaaccggttacggagaagtctccatgcgagaataga 39430831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 17318704 - 17318785
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgccgctctccactcctccca 447  Q
    |||||||||||||| ||||||| || |||||| ||||||||||||  ||||||||||| ||||||| ||| || |||||||||    
T  17318704 aacaacctacactcccctaatagcttctcctcacactcccacaacctccgcctccactgccacgccactc-cccctcctccca 17318785  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 689
Target Start/End: Complemental strand, 9717702 - 9717617
Alignment:
Q  604 ttagcaaatactactaatgagaaggaagaaacgtagaatagtttaaccacaaataacttggaatgcaagttagagttagtttagaa 689  Q
    ||||||| ||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||| |||||||||||| ||||||    
T  9717702 ttagcaagtactactaatgagaaggaagaaacgcagaattgcttaaccacacataactttgaatgcgagttagagttagcttagaa 9717617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 5865345 - 5865410
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgcc 430  Q
    ||||||||||||||  |||| ||||||||||| ||| ||||||||  ||||||||||| |||||||    
T  5865345 aacaacctacactccgctaacaactcctcctctcacgcccacaacatccgcctccactgccacgcc 5865410  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 689
Target Start/End: Complemental strand, 13583969 - 13583884
Alignment:
Q  604 ttagcaaatactactaatgagaaggaagaaacgtagaatagtttaaccacaaataacttggaatgcaagttagagttagtttagaa 689  Q
    ||||||| ||||||||||||||||||||||||| ||||| | ||||||||| ||||||| |||||| |||||||||||| ||||||    
T  13583969 ttagcaagtactactaatgagaaggaagaaacgcagaattgcttaaccacacataactttgaatgcgagttagagttagcttagaa 13583884  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 10392891 - 10392801
Alignment:
Q  46 aactctcagaatatggtacacgagaagaataaatgttgcgccgtttccacttttccgcacccagttacgcacatctgagcctcctgagaga 136  Q
    ||||||| ||| |||| |||| | | ||| |||||||||||||||||||||| ||| |||| ||| || |||||||||| ||| |||||||    
T  10392891 aactctcggaaaatgggacacaaaacgaacaaatgttgcgccgtttccacttctccacacctagtcacacacatctgagtctcatgagaga 10392801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 455
Target Start/End: Complemental strand, 28713220 - 28713130
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgccgctctccactcctcccaatctaaag 455  Q
    ||||||||||||||| |||  ||||||||||||||| |||||| |  || |||||||| ||||||| ||| || ||| || ||| ||||||    
T  28713220 aacaacctacactctgctaccaactcctcctcccacgcccacagcctcctcctccacttccacgcctctcccccctcgtctcaacctaaag 28713130  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 12340814 - 12340850
Alignment:
Q  373 acactctcctaataactcctcctcccactcccacaac 409  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12340814 acactcccctaataactcctcctcccactcccacaac 12340850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 33694848 - 33694938
Alignment:
Q  365 aacaacctacactctcctaataactcctcctcccactcccacaactgccgcctccactaccacgccgctctccactcctcccaatctaaag 455  Q
    ||||||||||||||| |||  ||||||||||||||| || ||| |  || |||||||| ||||||| ||| || ||| |||||| ||||||    
T  33694848 aacaacctacactctgctaccaactcctcctcccacgcctacagcctcctcctccacttccacgcctctcccccctcgtcccaacctaaag 33694938  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 2365415 - 2365359
Alignment:
Q  14 agaccctaatccaatcacgaactaaatgtcataactctcagaatatggtacacgaga 70  Q
    |||||| ||| ||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  2365415 agacccaaattcaatcacgaactaaatgacataactctccgaatatgttacaagaga 2365359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 26586223 - 26586284
Alignment:
Q  151 cccagattctccttggttggcaacctgttacggagaagtctccatacgagaatagacacctt 212  Q
    |||||||| || || |||||||| |||||||| ||||||| ||| |||| ||||||||||||    
T  26586223 cccagattgtcttttgttggcaatctgttacgtagaagtcgccaaacgaaaatagacacctt 26586284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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