View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4186_high_11 (Length: 332)

Name: NF4186_high_11
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4186_high_11
NF4186_high_11
[»] chr1 (9 HSPs)
chr1 (19-149)||(51487677-51487809)
chr1 (215-303)||(35597757-35597850)
chr1 (215-303)||(35598192-35598285)
chr1 (212-303)||(39514243-39514339)
chr1 (215-303)||(2052101-2052194)
chr1 (212-280)||(38211811-38211879)
chr1 (146-210)||(51488700-51488769)
chr1 (242-303)||(45507290-45507356)
chr1 (215-303)||(45507439-45507532)
[»] scaffold0160 (3 HSPs)
scaffold0160 (215-303)||(36039-36132)
scaffold0160 (242-280)||(36363-36401)
scaffold0160 (242-303)||(36215-36281)
[»] chr5 (7 HSPs)
chr5 (215-303)||(23179256-23179349)
chr5 (215-303)||(23179447-23179540)
chr5 (215-280)||(20844904-20844969)
chr5 (222-303)||(20842269-20842355)
chr5 (215-303)||(20844660-20844753)
chr5 (242-303)||(20844440-20844506)
chr5 (242-280)||(20845080-20845118)
[»] chr4 (5 HSPs)
chr4 (215-303)||(41862248-41862341)
chr4 (215-303)||(22673749-22673842)
chr4 (215-280)||(41946795-41946860)
chr4 (215-303)||(52680175-52680268)
chr4 (231-280)||(41862467-41862516)
[»] chr3 (16 HSPs)
chr3 (215-303)||(18199259-18199352)
chr3 (215-303)||(36094000-36094093)
chr3 (215-303)||(36094191-36094284)
chr3 (216-280)||(851130-851194)
chr3 (215-280)||(26943801-26943866)
chr3 (217-303)||(18256810-18256901)
chr3 (215-280)||(26943610-26943675)
chr3 (215-280)||(52419585-52419649)
chr3 (242-303)||(855059-855125)
chr3 (217-303)||(6953848-6953937)
chr3 (255-303)||(49566029-49566082)
chr3 (248-303)||(6953327-6953387)
chr3 (248-303)||(6953709-6953769)
chr3 (248-280)||(36947650-36947682)
chr3 (248-280)||(36947789-36947821)
chr3 (248-280)||(36947928-36947960)
[»] chr2 (18 HSPs)
chr2 (215-280)||(1925707-1925772)
chr2 (214-280)||(35433203-35433269)
chr2 (215-303)||(13899815-13899908)
chr2 (215-303)||(13905713-13905806)
chr2 (216-280)||(27999718-27999782)
chr2 (216-280)||(28090452-28090516)
chr2 (216-280)||(28096775-28096839)
chr2 (215-303)||(26453350-26453443)
chr2 (215-303)||(40603186-40603279)
chr2 (215-265)||(1271964-1272014)
chr2 (215-280)||(35433288-35433353)
chr2 (216-266)||(27999854-27999904)
chr2 (216-266)||(28090588-28090638)
chr2 (216-266)||(28096911-28096961)
chr2 (242-303)||(35433026-35433092)
chr2 (242-280)||(1925558-1925596)
chr2 (255-303)||(26452895-26452948)
chr2 (248-303)||(32287404-32287464)
[»] chr7 (7 HSPs)
chr7 (215-303)||(13927081-13927173)
chr7 (215-303)||(22004230-22004323)
chr7 (215-303)||(22004421-22004514)
chr7 (215-303)||(7891198-7891291)
chr7 (230-303)||(3600056-3600132)
chr7 (255-303)||(7890743-7890796)
chr7 (221-280)||(29954217-29954275)
[»] chr6 (1 HSPs)
chr6 (215-280)||(3589206-3589271)
[»] scaffold0121 (1 HSPs)
scaffold0121 (215-303)||(41147-41240)
[»] scaffold0119 (2 HSPs)
scaffold0119 (215-265)||(29223-29273)
scaffold0119 (215-265)||(35476-35526)
[»] chr8 (1 HSPs)
chr8 (248-303)||(18489804-18489864)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 51487677 - 51487809
Alignment:
19 tatgttgcccttaaatttaatgcagcatgttttgcaaaatgtgggaattgcttttttgatgtcatgtcctgtgattgttattgtcatactaata--tata 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||    
51487677 tatgttgcccttaaatttaatgcagcatgttttgcaaaatgtgggaattgcttttttgatgtcatgtcctgtgaatgtttttgtcatactaatactaata 51487776  T
117 aagtacagttgagcctttagtgaaagaaactat 149  Q
    |||||||||||||||||||||||||||||||||    
51487777 aagtacagttgagcctttagtgaaagaaactat 51487809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 35597850 - 35597757
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaac-----catatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||     |||||||||||||| |||||||||    
35597850 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaatcatatttcctaattcccctcctcc 35597757  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 35598285 - 35598192
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
35598285 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 35598192  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 39514339 - 39514243
Alignment:
212 caatgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
39514339 caatgttgccctagttccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 39514243  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 2052194 - 2052101
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||     ||||||||||||||||| |||||||||    
2052194 tgttgccctaattccaactaatatttaacctaaaaaattatagccacttttctctccttcaaaacctaaccatatttcctaattcccctcctcc 2052101  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 38211879 - 38211811
Alignment:
212 caatgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
38211879 caatgttgcactaattccacctaatatttaacctaaaaaattgtagccatttttccctcctttaaaacc 38211811  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 51488700 - 51488769
Alignment:
146 ctatatcgacagaaactcgatacttccctat-----attctacacaaaagtataatgatattggaataca 210  Q
    |||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||| ||||    
51488700 ctatatcgacagaaactcgatacttccctatgttatattctacacaaaagtataatgatattggattaca 51488769  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 45507356 - 45507290
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||||||    
45507356 acctaaaaaattgtagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 45507290  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 45507532 - 45507439
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaa-attgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||| | |||||| | ||||||||||     ||||||||||||| |||||||||    
45507532 tgttgtcctaattc-acctaatatttaacctaaaaatattgtagccatttttcctttcttcaaaacctaactatatttcctaattcccctcctcc 45507439  T

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Target: scaffold0160 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 36039 - 36132
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     ||||||||||||| || ||||||    
36039 tgttgccctaattccacctaatatttaacctaaaaaattgtagccacttttccctccttcaaaacctaaccatatttcctaattcccatcctcc 36132  T

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Target: scaffold0160; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 36363 - 36401
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||| |||||||||||||||||||||    
36363 acctaaaaaattgtagccacttttccctccttcaaaacc 36401  T

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Target: scaffold0160; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 36215 - 36281
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||| | |||||||||||||| ||     ||||||||||||||||| |||||||||    
36215 acctaaaaaattgtacccacttttccctcctttaaaacctaaccatatttcctaattcccctcctcc 36281  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 23179256 - 23179349
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
23179256 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 23179349  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 23179447 - 23179540
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
23179447 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 23179540  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 20844904 - 20844969
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
20844904 tgttgccctaattccacctaatatttaacctaaaaaattgtagccactttttcctccttcaaaacc 20844969  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 20842269 - 20842355
Alignment:
222 ctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    |||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||     ||||||||||||| |||||||||    
20842269 ctaattccacctaatatttaacttaaaaaattgtagccatttttccctccttcaaaacctaacaatatttcctaattcccctcctcc 20842355  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 20844660 - 20844753
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||||| |  | ||||||||| |||||||||     ||||||||||||| |||||||||    
20844660 tgttgccctaattccacctaatatttaacctaaaaaattgtggtcatttttccctcattcaaaacctaacgatatttcctaattcccctcctcc 20844753  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 20844440 - 20844506
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||||||||||||||| | |||||||||||||||||||     ||||||| ||||| |||||||||    
20844440 acctaaaaaattgtagccatttttccctccttcaaaacctaaccatatttcataattcccctcctcc 20844506  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 20845080 - 20845118
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    |||||||||||||| || |||||||||||||||||||||    
20845080 acctaaaaaattgtggccacttttccctccttcaaaacc 20845118  T

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Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 41862341 - 41862248
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
41862341 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 41862248  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 22673749 - 22673842
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
22673749 tgttgccctaattccaactaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 22673842  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 41946860 - 41946795
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
41946860 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacc 41946795  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 52680175 - 52680268
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||     ||||||||||||||||| |||||||||    
52680175 tgttgccctaattccaactaatatttaacctaaaaaattatagccacttttctctccttcaaaacctaaccatatttcctaattcccctcctcc 52680268  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 41862516 - 41862467
Alignment:
231 cctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||| |||| ||||| ||||| |||||||||    
41862516 cctaatatttaacctaaaaaattatagccactttaccctctttcaaaacc 41862467  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 18199259 - 18199352
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
18199259 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 18199352  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 36094093 - 36094000
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
36094093 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 36094000  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 36094284 - 36094191
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||     ||||||||||||| |||||||||    
36094284 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaacaatatttcctaattcccctcctcc 36094191  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 851130 - 851194
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
851130 gttgccctaattccacctaatatttaacctaaaaaattgtagccacttttccctccttcaaaacc 851194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 26943801 - 26943866
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
26943801 tgttgccctaattccacctaatatttaacctaaaaaattatagccacttttccctccttcaaaacc 26943866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 18256901 - 18256810
Alignment:
217 ttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||| |||||||||||||||||||| ||||||||||||||  |||||||||||||||||     ||||||||||||||||| |||||||||    
18256901 ttgccgtaattccacctaatatttaagctaaaaaattgtagtcacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 18256810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 26943610 - 26943675
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
26943610 tgttgccataattccacctaatatttaacctaaaaaattatagtcacttttccctccttcaaaacc 26943675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 52419649 - 52419585
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||| |||||  ||||||||||||||||||||| | ||||| |||||||||||||||||||||    
52419649 tgttgccttaattatacctaatatttaacctaaaaa-tcgtagccacttttccctccttcaaaacc 52419585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 855059 - 855125
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||  |||||||||||||||||     ||||||||||||||||| |||||||||    
855059 acctaaaaaattgtagacacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 855125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 6953937 - 6953848
Alignment:
217 ttgccctaattccacctaatattt-aacctaaaaaattgtagctacttttccctccttcaaaa-----ccatatttcctaatttccctcctcc 303  Q
    |||||||||||  || |||||||| |||||||||  ||||||| |||||||||||||||||||     ||||||||||||||| |||||||||    
6953937 ttgccctaattatacttaatattttaacctaaaa--ttgtagc-acttttccctccttcaaaatctaaccatatttcctaattcccctcctcc 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 49566082 - 49566029
Alignment:
255 tagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    |||| |||||||||||||||||||||     |||||||||||||||||||||||    
49566082 tagcaacttttccctccttcaaaacctaaccatatttcctaatttccctcctcc 49566029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 6953387 - 6953327
Alignment:
248 aaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||| | |||||||||||||||||     ||||||||||||||||| |||||||||    
6953387 aaaattgtaaccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 6953769 - 6953709
Alignment:
248 aaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||||||| | |||||||||||||||||||||     ||||||||||||| |||||||||    
6953769 aaaattgtaaccacttttccctccttcaaaacctaactatatttcctaattcccctcctcc 6953709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 36947682 - 36947650
Alignment:
248 aaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||| |||||||||||||||||||||    
36947682 aaaattgtagccacttttccctccttcaaaacc 36947650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 36947821 - 36947789
Alignment:
248 aaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||| |||||||||||||||||||||    
36947821 aaaattgtagccacttttccctccttcaaaacc 36947789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 36947960 - 36947928
Alignment:
248 aaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||| |||||||||||||||||||||    
36947960 aaaattgtagccacttttccctccttcaaaacc 36947928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 1925772 - 1925707
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
1925772 tgttgccctaattccacctaatatttaacctaaaaaattgtagatacttttccctccttcaaaacc 1925707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 35433269 - 35433203
Alignment:
214 atgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
35433269 atgttgccctaattccacctaatatttaacctaaaaagttgtagccacttttccctccttcaaaacc 35433203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 13899815 - 13899908
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
13899815 tgttgccctaattccaccgaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattaccctcctcc 13899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 13905713 - 13905806
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
13905713 tgttgccctaattccacctaatatttaacccaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 27999782 - 27999718
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
27999782 gttgccctaattccacctaatatttaacctaaaaaattgtagccacttttccctccttcataacc 27999718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 28090516 - 28090452
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
28090516 gttgccctaattccacctaatatttaacctaaaaaattgtagccacttttccctccttcataacc 28090452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 28096839 - 28096775
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
28096839 gttgccctaattccacctaatatttaacctaaaaaattgtagccacttttccctccttcataacc 28096775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 26453350 - 26453443
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||     ||||||||||||||||| |||||||||    
26453350 tgttgccctaattccaactaatatttaacctaaaaaattatagccacttttctctccttcaaaacctaaccatatttcctaattcccctcctcc 26453443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 40603186 - 40603279
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||     ||||||||||||||||| |||||||||    
40603186 tgttgccctaattccaactaatatttaacctaaaaaattatagccacttttctctccttcaaaacctaaccatatttcctaattcccctcctcc 40603279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 1271964 - 1272014
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctactttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
1271964 tgttgccctaattccacctaatatttaacctaaaaaattgtagccactttt 1272014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 35433353 - 35433288
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||| |||||||||||||    
35433353 tgttgccctaattccacctaatatttaatttaaaaagttgtagccacttttctctccttcaaaacc 35433288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 27999904 - 27999854
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||    
27999904 gttgccctaattccacctaatatttaacctaaaaaattgtaaccacttttc 27999854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 28090638 - 28090588
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||    
28090638 gttgccctaattccacctaatatttaacctaaaaaattgtaaccacttttc 28090588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 28096961 - 28096911
Alignment:
216 gttgccctaattccacctaatatttaacctaaaaaattgtagctacttttc 266  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||    
28096961 gttgccctaattccacctaatatttaacctaaaaaattgtaaccacttttc 28096911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 35433092 - 35433026
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||| |||||||| |||||||||||||||||     ||||||||||||||||| |||||||||    
35433092 acctaaaatattgtagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 35433026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 1925596 - 1925558
Alignment:
242 acctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||| ||||||| |||||||||||||    
1925596 acctaaaaaattgtagccacttttctctccttcaaaacc 1925558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 26452895 - 26452948
Alignment:
255 tagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    |||| |||||||||||||||||||||     |||||||||||||||||||||||    
26452895 tagcaacttttccctccttcaaaacctaaccatatttcctaatttccctcctcc 26452948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 32287404 - 32287464
Alignment:
248 aaaattgtagctacttttccctccttcaaaac-----catatttcctaatttccctcctcc 303  Q
    ||||||||| | ||||||||||||||||||||     |||||||||||||| |||||||||    
32287404 aaaattgtaaccacttttccctccttcaaaacctaatcatatttcctaattcccctcctcc 32287464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 13927081 - 13927173
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||     |||||||||||||||||||||||    
13927081 tgttgccctaatttcacctaatatttaacctaaaaaattgtagccac-tttccctccttcaaaacctaactatatttcctaatttccctcctcc 13927173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 22004230 - 22004323
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
22004230 tgttgccctaattccaccgaatatttaacctaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattaccctcctcc 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 22004421 - 22004514
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
22004421 tgttgccctaattccacctaatatttaacccaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 7891198 - 7891291
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||     ||||||||||||||||| |||||||||    
7891198 tgttgccctaattccaactaatatttaacctaaaaaattatagctatttttctctccttcaaaacctaaccatatttcctaattcccctcctcc 7891291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 3600132 - 3600056
Alignment:
230 acctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||||||||||||  ||||||| |||||||| ||||||||     ||||||||||||||||| |||||||||    
3600132 acctaatatttaacctaaaa--ttgtagccacttttccttccttcaaaacctaaccatatttcctaattcccctcctcc 3600056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Original strand, 7890743 - 7890796
Alignment:
255 tagctacttttccctccttcaaaacc-----atatttcctaatttccctcctcc 303  Q
    |||| |||||||||||||||||||||     |||||||||||||||||||||||    
7890743 tagcaacttttccctccttcaaaacctaaccatatttcctaatttccctcctcc 7890796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 29954217 - 29954275
Alignment:
221 cctaattccacctaatattt-aacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    |||||||  ||||||||||| |||||||||  ||||||| |||||||||||||||||||||    
29954217 cctaattatacctaatattttaacctaaaa--ttgtagccacttttccctccttcaaaacc 29954275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 3589206 - 3589271
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaaaacc 280  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||    
3589206 tgttgccctaattccacctaatatttaacctaaaaaattatagccatttttccctccttcaaaacc 3589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 41147 - 41240
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    |||||||||||||||| | ||||||||||| |||||||| |||| |||||||||||||||||     ||||||||||||||||| |||||||||    
41147 tgttgccctaattccaacaaatatttaaccaaaaaaattatagccacttttccctccttcaaaacctaaccatatttcctaattcccctcctcc 41240  T

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Target: scaffold0119 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 29273 - 29223
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctactttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
29273 tgttgccctaattccacctaatatttaacctaaaaaattgtagccactttt 29223  T

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Target: scaffold0119; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 215 - 265
Target Start/End: Complemental strand, 35526 - 35476
Alignment:
215 tgttgccctaattccacctaatatttaacctaaaaaattgtagctactttt 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
35526 tgttgccctaattccacctaatatttaacctaaaaaattgtagccactttt 35476  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 18489864 - 18489804
Alignment:
248 aaaattgtagctacttttccctccttcaa-----aaccatatttcctaatttccctcctcc 303  Q
    ||||||||||  |||||||||||||||||     ||||||||||||||||| |||||||||    
18489864 aaaattgtagtcacttttccctccttcaaaacataaccatatttcctaattcccctcctcc 18489804  T

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