View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_high_14 (Length: 301)
Name: NF4186_high_14
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 32716862 - 32716592
Alignment:
| Q |
19 |
cttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggctggtaatatgtgtttgaaagagaaaggaaaattatggaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32716862 |
cttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggctggtaatatgtgtttgaaagagaaaggaaaattatagaa |
32716763 |
T |
|
| Q |
119 |
atgagtggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtcgttaccgtcatatttgatcagagcaccgccgcaagca |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
32716762 |
atgagtggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgccgttaccgtcatatttgatcagagcaccgccgcgagca |
32716663 |
T |
|
| Q |
219 |
gctccttcctccagcatccaccacgtgcactaccaattccgtctggattgaggtttcatcttccttctcct |
289 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32716662 |
gctccttcctccagcaaccaccacgtgcactaccaattccgtctggattgaggtttcatcttccttctcct |
32716592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 34176784 - 34177055
Alignment:
| Q |
19 |
cttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggc-tggtaatatgtgtttgaaagagaaaggaaaattatgga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |
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| T |
34176784 |
cttccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaacaaaggcatggtaatatgtgtttgaaagagaaaggaaaactataga |
34176883 |
T |
|
| Q |
118 |
aatgagtggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtcgttaccgtcatatttgatcagagcaccgccgcaagc |
217 |
Q |
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|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||| |
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| T |
34176884 |
aatgagaggaaataactgcaacatcaatcacattcatcactgccgcaaatcgatctacgtcgccgttaccgtcatctttggccagagcaccgccgcgagc |
34176983 |
T |
|
| Q |
218 |
agctccttcctccagcatccaccacgtgcactaccaattccgtctggattgaggtttcatcttccttctcct |
289 |
Q |
| |
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| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34176984 |
aactccttcctccagcaaccaccacgtgcactactgattccgtctggattgaggtttcatcttccttctcct |
34177055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 111 - 289
Target Start/End: Complemental strand, 23455475 - 23455297
Alignment:
| Q |
111 |
ttatggaaatgagtggaaatagctgcaacatcaatcacattcaacactgccgcaaatcgatctacgtcgtcgttaccgtcatatttgatcagagcaccgc |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23455475 |
ttatagaaatgagtggaaatagctgcaacatcaatcacattcaacactgccgtaaatcgatctacgtcgccgttaccgtcatatttgatcagagcaccgc |
23455376 |
T |
|
| Q |
211 |
cgcaagcagctccttcctccagcatccaccacgtgcactaccaattccgtctggattgaggtttcatcttccttctcct |
289 |
Q |
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| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23455375 |
cacgagcagctccttcctccaacaaccaccacgtgcactaccaattccgtctggattgaggtttcatcttccttctcct |
23455297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 23455552 - 23455501
Alignment:
| Q |
21 |
tccaatatcaacgtgttcaaactcatcaaaatccatcactcatatccaaaaa |
72 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
23455552 |
tccaatatcaacgtgttcaaactcatcaaaatccatcacccatatccaaaaa |
23455501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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