View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4186_high_4 (Length: 510)

Name: NF4186_high_4
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4186_high_4
NF4186_high_4
[»] chr4 (2 HSPs)
chr4 (89-494)||(2233777-2234163)
chr4 (402-438)||(51093271-51093307)
[»] chr7 (1 HSPs)
chr7 (402-486)||(45369128-45369212)
[»] chr1 (1 HSPs)
chr1 (404-438)||(42423225-42423259)
[»] chr3 (1 HSPs)
chr3 (286-319)||(31428632-31428665)
[»] chr6 (1 HSPs)
chr6 (373-421)||(24974201-24974249)
[»] chr2 (3 HSPs)
chr2 (286-326)||(4894142-4894182)
chr2 (286-326)||(11511013-11511053)
chr2 (286-326)||(28206737-28206777)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 89 - 494
Target Start/End: Complemental strand, 2234163 - 2233777
Alignment:
Q  89 gcatcaagggctggcctaagagtaaggttactaaagtctaagctttaagcctaccaacaaaagtaaactcatcatattttataaatgaaaagaccacata 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2234163 gcatcaagggctggcctaagagtaaggttactaaagtctaagctttaagcctaccaacaaaagtaaactcatcatattttataaatgaaaagaccacata 2234064  T
Q  189 tatatgcagacaaaaaatcgcatatattaaaacttgttttatgcatcacttactgaaaattattaagtcagccctgaacccaacaaaacacattttcgtt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2234063 tatatgcagacaaaaaatcgcatatattaaaacttgttttatgcatcacttactgaaaattattaagtcagccctgaacccaacaaaacacattgtcgtt 2233964  T
Q  289 tagatacattcatataaaagtgtgttgaataataaattatgggttgaataataaactaaaggctaaaatttaatcagatgagtcaaaaactctaaactct 388  Q
    ||||||||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2233963 tagatacattcatataaaagtgtgttgaataa-------------------taaactaaaggctaaaatttaatcagatgagtcaaaaactctaaactct 2233883  T
Q  389 agtttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatcctagaaacaaaatcaattttccttgagaacattc 488  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2233882 agcttcatgttacaatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatcctagaaacaaaatcaattttccttgagaacattc 2233783  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 51093307 - 51093271
Alignment:
Q  402 aatcaattttagaggcaaaagctctaaattctagctt 438  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  51093307 aatcaattgtagaggcaaaagctccaaattctagctt 51093271  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 45369212 - 45369128
Alignment:
Q  402 aatcaattttagaggcaaaagctctaaattctagctttaggctagaattgatcctagaaacaaaatcaattttccttgagaacat 486  Q
    ||||||||||||||||||||||||  ||||||||||| | | || |||  || |||||| ||||||||||| | |||||||||||    
T  45369212 aatcaattttagaggcaaaagctccgaattctagcttcaagttaaaatcaattctagaagcaaaatcaattctacttgagaacat 45369128  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 438
Target Start/End: Original strand, 42423225 - 42423259
Alignment:
Q  404 tcaattttagaggcaaaagctctaaattctagctt 438  Q
    |||||||||||| ||||||||||||||||||||||    
T  42423225 tcaattttagagacaaaagctctaaattctagctt 42423259  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 31428665 - 31428632
Alignment:
Q  286 gtttagatacattcatataaaagtgtgttgaata 319  Q
    ||||||||||||||||||||||||| ||||||||    
T  31428665 gtttagatacattcatataaaagtgagttgaata 31428632  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 24974249 - 24974201
Alignment:
Q  373 aaaaactctaaactctagtttcatgttacaatcaattttagaggcaaaa 421  Q
    |||||||||||| ||| | ||||||||| |||||||||| |||||||||    
T  24974249 aaaaactctaaattctcgcttcatgttagaatcaattttggaggcaaaa 24974201  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 4894142 - 4894182
Alignment:
Q  286 gtttagatacattcatataaaagtgtgttgaataataaatt 326  Q
    |||||||||||||||| ||||||||  ||||||||||||||    
T  4894142 gtttagatacattcatttaaaagtgacttgaataataaatt 4894182  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 11511053 - 11511013
Alignment:
Q  286 gtttagatacattcatataaaagtgtgttgaataataaatt 326  Q
    |||||| |||||||||||||||||| |||||| ||||||||    
T  11511053 gtttagctacattcatataaaagtgggttgaacaataaatt 11511013  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 326
Target Start/End: Complemental strand, 28206777 - 28206737
Alignment:
Q  286 gtttagatacattcatataaaagtgtgttgaataataaatt 326  Q
    |||||| ||||||||| ||||||| ||||||||||||||||    
T  28206777 gtttaggtacattcatgtaaaagtttgttgaataataaatt 28206737  T

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