View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4186_low_11 (Length: 345)
Name: NF4186_low_11
Description: NF4186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4186_low_11 |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 132 - 345
Target Start/End: Complemental strand, 11591091 - 11590878
Alignment:
| Q |
132 |
gcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
231 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11591091 |
gcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
11590992 |
T |
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| Q |
232 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatc |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
11590991 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcttttctgaatatcctcaatctaatgtctcttacttggcatc |
11590892 |
T |
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| Q |
332 |
tggtttatttggct |
345 |
Q |
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|||||||||||||| |
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| T |
11590891 |
tggtttatttggct |
11590878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 132 - 345
Target Start/End: Original strand, 11646576 - 11646789
Alignment:
| Q |
132 |
gcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
231 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646576 |
gcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgct |
11646675 |
T |
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| Q |
232 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatattcttcatttctgaacatcttcaatctcatgtctcttacttggcatc |
331 |
Q |
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| T |
11646676 |
gttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgtattcttcttttctgaatatcctcaatctgatgtctcttacttggcatc |
11646775 |
T |
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| Q |
332 |
tggtttatttggct |
345 |
Q |
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|||||||||||||| |
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| T |
11646776 |
tggtttatttggct |
11646789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 11591206 - 11591158
Alignment:
| Q |
17 |
attgttctgttgttttcaataatcagttaatgtttgaaaggatgaaaat |
65 |
Q |
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| T |
11591206 |
attgttctgttgttttcaatgatcagttaatgtttgaaaggatgaaaat |
11591158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11646461 - 11646509
Alignment:
| Q |
17 |
attgttctgttgttttcaataatcagttaatgtttgaaaggatgaaaat |
65 |
Q |
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| T |
11646461 |
attgttctgttgttttcaatgatcagttaatgtttgaaaggatgaaaat |
11646509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 41833746 - 41833778
Alignment:
| Q |
313 |
atgtctcttacttggcatctggtttatttggct |
345 |
Q |
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| T |
41833746 |
atgtctcttacttggcatctggtttatttggct |
41833778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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